KEGG   Cryptococcus decagattii: 89989288
Entry
89989288          CDS       T10966                                 
Symbol
IAS62_002515
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cdec  Cryptococcus decagattii
Pathway
cdec03030  DNA replication
cdec03410  Base excision repair
cdec03420  Nucleotide excision repair
cdec03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cdec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    89989288 (IAS62_002515)
   03410 Base excision repair
    89989288 (IAS62_002515)
   03420 Nucleotide excision repair
    89989288 (IAS62_002515)
   03430 Mismatch repair
    89989288 (IAS62_002515)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cdec03032]
    89989288 (IAS62_002515)
   03400 DNA repair and recombination proteins [BR:cdec03400]
    89989288 (IAS62_002515)
Enzymes [BR:cdec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     89989288 (IAS62_002515)
    6.5.1.6  DNA ligase (ATP or NAD+)
     89989288 (IAS62_002515)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     89989288 (IAS62_002515)
DNA replication proteins [BR:cdec03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    89989288 (IAS62_002515)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     89989288 (IAS62_002515)
DNA repair and recombination proteins [BR:cdec03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     89989288 (IAS62_002515)
   NER (nucleotide excision repair)
    Other NER factors
     89989288 (IAS62_002515)
   MMR (mismatch excision repair)
    Other MMR factors
     89989288 (IAS62_002515)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase FAS_N
Other DBs
NCBI-GeneID: 89989288
NCBI-ProteinID: XP_064720447
LinkDB
Position
4:complement(join(434027..434194,434246..434593,434650..434880,434936..435118,435177..435388,435455..435540,435599..435674,435725..435887,435940..436041,436096..436236,436296..436467,436518..436586,436638..436953,437012..437149,437197..437203))
AA seq 803 aa
MSDTGFPVKANIRKKRTVILSDDEDEGLSPPVTKKQLSSPRHSHASDEETEPPRKIAKTS
AKMAPIFAPKEKKEKPPPKASSSSPKAPTKKTEVKSKDEKPLASIFTKSIRKPEPKDDDE
ISDEVKQQGKEEEEEDEIYDENEDKQEGEAAAKLASIFTKNEKSVPVADKGWKDGEAVPY
SALVSTFEKIEATTKRLEILELLTQFLLVVAKRDTATDTKGSMLLKVVYLCINRLCPDYM
GIELGIGESLLVKAIAESTGRAMPKIKEDLKKEGDLGKVAMNSRNTQLTMFKPKALTVPY
VFQCLTEIAKATGNASQAKKVGIIKKLLAACQGAEAKFIIRSLEGKLRIGLADKTVVVAL
AHAIVLKTIGDKKPSPEKLAIMLEQGAETVKAVYSELPSYDLVIPALLQDGVEGLRKHCK
LTPGVPLKPMLAKPTKAITEVLDRFEGKEFTCEYKYDGERAQVHLLEDGTISVFSRNSEN
MSAKYPDLVDQIPRALKPTAKTFVIDAEAVAYDLETKKILPFQDLSRRKRKDVKAEDITV
RVHIFAFDLLYLNGESLLAKELKERRRLLQEHFQPVESEFAFAKSSDGSTSEEIQAFLEE
SVKDGCEGLMVKMLTSEASTYEPSRRSTNWLKLKKDYLSGVGDSLDLVVVGAYHGKGKRT
AVYGAFLLACYDPDSEHYQTICKIGTGFSEEILTQFYELLKPLELGVVRGDIEVGGAKPD
VWFEPRVVWEVLTADLSLSPVYAAAHGVIDSRGISLRFPRFIRIRDDKSADEATTAEQVS
EFYQRQVSAGGKKGSGADVDDFW
NT seq 2412 nt   +upstreamnt  +downstreamnt
atgagtgatacaggctttccagtgaaggctaacatcaggaagaagcggacggttatcctg
tccgatgacgaggacgaaggacttagcccacctgtgaccaaaaagcagctttcgtctccc
agacattctcatgcatctgatgaagagacagagcctccccggaaaattgcgaaaacatca
gccaaaatggcgcctatcttcgctccaaaagagaagaaagaaaaaccacctcccaaggcc
tcatcatcttcgcctaaagcacccaccaagaagacagaggttaagagcaaggatgaaaaa
ccacttgcatcaatattcacaaaatcgatacgaaagcctgagcctaaggatgacgatgag
atatccgatgaggtgaaacaacaggggaaagaagaagaagaggaggatgagatatatgat
gagaatgaggataagcaggaaggagaggccgccgccaaactggcttcgatctttaccaag
aacgaaaaatctgtccccgtggctgacaagggctggaaagacggtgaagcggtcccctat
tccgctctcgtgtcaacctttgaaaaaattgaggctactaccaagcggttagagattctc
gaactcttaacccagttcttgctcgttgttgccaagagagatacggccacggacaccaaa
gggtctatgcttctcaaagtggtctatctttgtatcaacagactatgccccgactatatg
ggtatcgagcttggtattggggaatcattattggtcaaggccattgcagagagcacaggg
cgggccatgcctaagatcaaagaagacttaaagaaggaaggagacctcggaaaggttgcc
atgaactctagaaacactcaattaaccatgttcaagcccaaagccctgacagtaccatat
gtcttccaatgtctcactgagattgcaaaggctaccgggaacgcgtctcaagcgaagaaa
gtaggtatcatcaaaaaactccttgctgcctgccagggtgccgaggcgaaattcatcatc
cgatctctcgaaggaaagttacgaatcggtcttgccgacaaaacggtcgtggttgccttg
gcccacgctatcgttctgaagaccatcggtgacaaaaagccatcgcctgagaaacttgcc
attatgctggaacaaggcgctgaaactgttaaagctgtctatagtgaacttccttcatat
gacttagtaattcctgctcttctccaagatggcgtagaaggtttgaggaaacattgtaaa
cttactccaggcgtccctctcaaacctatgcttgccaagccgacgaaagccatcacagag
gttcttgaccgtttcgaaggcaaggaattcacttgcgagtacaaatatgacggagagcgt
gctcaggtccacctgttggaagatggtaccatttctgtgttcagcagaaattcagaaaac
atgagtgccaagtatcctgatctggtagatcaaataccgagggctttgaaacctactgcg
aagacgtttgtcatcgatgccgaagcggttgcttatgacttggaaaccaagaagatactg
cccttccaggatctcagtaggcggaagcgaaaggacgtcaaggccgaagacatcacagtg
cgagtacatatctttgcgttcgatttgctctatctgaatggagagagtctcctcgctaaa
gagctcaaagaaagacgacgactcttacaagagcacttccaacctgtggaatcggagttt
gcctttgctaagtcatcagatggcagcacgtcagaggaaattcaggcgttcctcgaggaa
agcgtgaaggatgggtgtgagggtctgatggtgaagatgctcactagtgaggcatcaacg
tatgagcccagtagaagaagtacgaattggctcaagctcaagaaagactacctttcaggt
gttggagactctctcgatcttgttgtggtaggggcatatcatggcaaaggcaaacgtaca
gcagtctatggtgctttcctcctcgcatgctatgaccccgattcggagcattaccagact
atctgcaagattggtactggtttctccgaagaaatcctcacgcaattctacgaattactt
aaacctttggaattgggagtcgtgagaggagatatagaggttggaggagccaagcccgat
gtatggtttgagcccagagtggtctgggaggtcttgacggccgatttgagtttaagtccg
gtttatgcggcggcgcatggtgtaatcgattcgcgaggaatctcgctccgtttccctcga
tttattcggatcagagatgacaaatctgctgacgaagctacaacagctgagcaggtcagc
gaattctatcaacgtcaggtttcggcaggtggcaagaaagggtcgggggcggatgtggat
gacttctggtaa

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