Cryptococcus decagattii: 89991079
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Entry
89991079 CDS
T10966
Symbol
IAS62_004307
Name
(RefSeq) mRNA cleavage and polyadenylation factor Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cdec Cryptococcus decagattii
Pathway
cdec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
89991079 (IAS62_004307)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdec03019
]
89991079 (IAS62_004307)
Enzymes [BR:
cdec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
89991079 (IAS62_004307)
Messenger RNA biogenesis [BR:
cdec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
89991079 (IAS62_004307)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clp1
CLP1_P
CLP1_N
AAA_28
AAA_16
Dynamin_N
ATPase_2
SRPRB
Arf
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
89991079
NCBI-ProteinID:
XP_064722202
LinkDB
All DBs
Position
7:complement(join(240002..240113,240166..240997,241053..241302,241357..241722,242113..242211))
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AA seq
552 aa
AA seq
DB search
MTEQQTTELTNIDLEAGSEWRFELEADENIALRTLSSDPVFINSQELTPSAWYPIYRHTK
SALYAPTPARIQVTNLPASQYTSTSTVQPQLLNLHLAMERQRILSKRGLEQRGPRVMIMG
PQSSGKTTVMKNLVNLALGTGMGWTPGVIGLDPSSPPNLIPGSLSISTPSHPIPTHHLAH
PLGSPPASTAANTVSGDVETASWWLGALEPTNKNAEVWRVLVEHMAEAWRMRCEKDRNAS
ISGLFLDTPAAFTVPTLGTKKDDPKARYTLVSHAIQAFDIDTIIVIGHEKLHIDLSRLPI
VQSRPLNVIRVPKSGGAVDLDDHDRETAHLFQVRTYFYGEPPLPPQISSLVGKMVSLDFE
LSPYSFQIPWSRLVVLRVGEENSAPSSALPLGSSKVLSPLRLTRVDPSGPGHVVRLLNRV
LALVDVKPEDKIVPAKEPEVKEEVKEEKSEKDGEVKQEDGEGEKIGQGEGEGDGDGDGDG
EGEGEGDAEGEGEDDQEEVPFREEIGTREVLGFIVITAIDTFARKYTVLSPTPGRLPTTV
AIAGAIEWVDSA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacagcaaactactgaactcacaaatatcgacctcgaagccggatcagaatgg
agatttgaactcgaagccgatgaaaacattgcactaagaactctctcttccgatccagtt
tttatcaactctcaagaacttactccttcggcctggtatccgatctaccggcacacaaaa
tccgctctctatgccccaactcctgccagaatacaggtgacaaacctcccggcatcccaa
tatacatccacatccaccgttcaaccgcagctgctgaatctccatctggcaatggagcgc
cagcggatactgtcaaagcgagggttggagcagcgagggcctcgggtgatgatcatgggg
cctcaaagttcaggaaagacaacagtcatgaagaacttagtcaatttggcgttagggacc
ggtatgggctggacacctggtgtgattggcctggatccgtcaagtcctcctaaccttatc
ccaggaagtttgtccatctcgacaccatcacatccgatccccacccatcatttggcccat
cccttgggctcaccacccgcttctactgcggccaatactgtctcgggagatgtagaaacg
gccagctggtggcttggagctcttgaaccgacaaacaagaatgccgaagtatggcgggtt
ctggttgagcacatggcagaagcttggcgaatgagatgtgaaaaggacaggaacgccagc
atctctggcctcttcctcgatacccctgccgcattcacggtccccactctcggcaccaag
aaagacgaccctaaagcccgatatactttggtcagtcatgctatccaggcgtttgatatt
gacaccatcatcgtcattggccacgaaaagctacatatcgatctctcccgtcttcctata
gtacaatcacgcccactcaacgtgatccgtgtccccaaatcaggcggcgctgtcgacctt
gatgatcacgatcgcgagaccgctcatctcttccaagtccgaacctatttttatggtgaa
ccgcctctcccgccacaaatctccagcctcgtagggaagatggtgtctctcgatttcgag
ttatcgccatactcattccagattccatggagcaggcttgttgttcttcgtgtcggggaa
gaaaactcggccccgtcgtccgccctgccacttggttccagcaaggtactgtcaccttta
aggttgactagggtggatcccagtggacccggacatgtagtaaggctgttgaatagggtc
ttggcgttggtggatgtcaagcctgaggataagattgtgccggcgaaagaaccagaggta
aaagaggaagtgaaggaagaaaagagcgagaaggatggagaggttaaacaagaagatggc
gagggagaaaaaataggacaaggggagggcgagggcgatggcgatggcgacggcgacggc
gaaggagaaggcgagggagatgctgaaggtgaaggtgaggatgatcaggaagaagtaccg
ttcagggaagagattgggacaagggaagtgttgggtttcatcgtcatcactgccatagat
acattcgctcgcaagtataccgtgttatcacccacaccaggccgtctgccgactacggtc
gccatcgctggtgctatcgaatgggttgactctgcttaa
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