Cryptococcus decagattii: 89991131
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Entry
89991131 CDS
T10966
Symbol
IAS62_004359
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cdec Cryptococcus decagattii
Pathway
cdec03020
RNA polymerase
cdec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
89991131 (IAS62_004359)
09124 Replication and repair
03420 Nucleotide excision repair
89991131 (IAS62_004359)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdec03021
]
89991131 (IAS62_004359)
03400 DNA repair and recombination proteins [BR:
cdec03400
]
89991131 (IAS62_004359)
Enzymes [BR:
cdec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
89991131 (IAS62_004359)
Transcription machinery [BR:
cdec03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
89991131 (IAS62_004359)
DNA repair and recombination proteins [BR:
cdec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
89991131 (IAS62_004359)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
AcetDehyd-dimer
DUF7518
Salivary_glue
Motif
Other DBs
NCBI-GeneID:
89991131
NCBI-ProteinID:
XP_064722254
UniProt:
A0ABZ2AWU1
LinkDB
All DBs
Position
7:complement(join(370096..370243,370296..370400,370456..372869,372918..374033,374083..374143,374195..374242,374296..374317,374369..374448,374507..374687,374743..375310,375362..375628,375685..375857,375919..376012,376086..376169))
Genome browser
AA seq
1786 aa
AA seq
DB search
MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT
IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP
MVANAVRRIKAQHRLKAIWALAKDKKICEPDELDEKDNGDATFEDEYLQEKKAVMKGHGG
CGHEQPVWRKKGLKLLGVWKPTDKGEDEATEPEERNVSPGEVYNILKKITPEDLHIMGLN
ADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVRRMEAEGV
PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKR
VDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPGARY
YVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMN
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIV
QDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKPKPMWTGKQLLSMTIPK
GINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLVHVIFRELGHVAAR
DFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKEAVQKLIQEAEANRMK
PKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVVSGAKGSFINISQMSG
VVGQQFVEGKRIAFGFRHRSLPHFSKDDYGPESRGFVENSYLRGLTPQEFWFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLYGEDGMDGAAMEKQSL
DIIRLSDRAFEKRYKIDVLGANGFSKGVLQAGIDQSSISLQKLLDEEFAQISDDRHILRS
EIYQDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLLEQREALAERLLVVRGDD
KLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQIFNKAVVNAAEMV
GTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINVAINIRTPALNVYLDPEY
SKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDKDFVDAFFAIPDEDIRLE
LHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHSEDNAPKLVIRIRVVAEK
EDEELLGDEDMFLKRIEGTLLDQVELGGITGITRVFISEGKQVVISQNGEYDQQKEWFLE
TDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARNALYKELNGVIEMGGSYVNYRH
LALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETVEILLEAAAVGDIDDCKGVAEN
VLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMAAGMAGGMTPGGAMTPYDNLSP
MWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAGYSPSSPAGYSPTSP
FAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFS
PSSPTYSPASPAYGGAGVGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAF
SPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPSYSPASPAYSPTSPQYSPTSPAYSPT
SPAYSPTSPAYGGAAPNGGTAQQQNGPARPGWGNAGGYGTSPSWKS
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcacatttccttactcctctgcgccggtcaagcaggtcaaggagatccagttt
ggtattatgagcccagaggagattaaagccttttctgtcgccaaaatcgaatccaccgag
gtcttggatgagaatgggaagcaaaaggttggaggtctgatggatcccaagatgggcacc
atcgacaggaatttcaaatgtcaaacttgtctcgaaggcatgtccgaatgtccaggtcat
tttggtcatatcgaactcgcccgaccggtttttcaccaagggttcattgtcaaggtgaag
aagatcttggagtgtgtttgttatagctgtggaaaactcaaggtcgacatgcgagatccg
atggtagcgaatgcggtccgacgtataaaggctcaacaccgactcaaagccatttgggcg
ctcgctaaggacaagaagatctgtgaacctgatgagctggacgaaaaggataacggcgat
gccacatttgaggacgagtatctgcaagaaaaaaaggcggtaatgaagggtcacggtggt
tgtggtcacgaacaacctgtatggagaaagaagggattaaaattgctgggtgtctggaag
cctaccgacaagggagaagatgaggccaccgagccagaggaacgcaatgtttctccaggg
gaagtttacaacatccttaaaaagatcactcccgaggatctgcatatcatgggtctcaat
gccgactatgcccgacccgactggatgattcttactgttcttcctgtacctcctgcagct
gtccgaccttcaatcgccgtcgacggtggtgccatgcgtagtgaagacgatttgacctac
aagctttcacagatcatcaagttcaacggtgtcgtacgacgaatggaggccgaaggtgta
ccgcccagtgtcgtaaacgaacagttcgacttgcttcagtaccatgtatgtacatacatg
gacaatgacattgcaggattgcctagagatcaacagaagggaggtagggccatcaaggct
atcagggcgaggttaaaaggaaaagaaggtcgtatgagaggtaatttgatgggaaagcgt
gtcgatttttcagcgcgaacggttattactggtgatcccaacttgcaattggatcaggtc
ggtgtgcccaaaagtatcgccatgactttgacataccctgagcgagttactccatacaat
attgtctaccttcaaacccttgtcaacaatggtcccgctacctatcccggtgctcgatac
tacgtcaaggacactggagaacgagtcgatttgaagtaccgcaaatctggtgaaccgatc
agtttgcagtttggttggattgtggaaagacatttgaaggatggggactacgtactgttt
aaccgacaaccgagtttgcataaaatgtccatgatgtcccatcgagtcaagttgatgaat
tattctactttccgtttgaacctttcagttacctcaccttataatgcagatttcgacggt
gatgaaatgaacttgcacgttccgcagagtgaagagacaagagcagagttgagtcagatt
gcttgggttcccagacagattgtctcgccccaagcgaacaagccggttatgggtattgtc
caggacactctgtgtggtatccgtaaattcactctccgagacaacttcctcgactggctt
caagttcagcacattcttctttggcttcctgaatgggacggaaccatccccccaccagcc
attttcaagcctaagcccatgtggaccggtaaacagcttttatccatgaccattcccaag
ggaatcaacatcacctataaaaacaatgagaagccttcgcctatcgacgtgacagatgag
aatgtgttgatcgaaaatggggagttagtgcacggaacgattgtgaagaacatggccggc
agtgccaacaacggtttggtgcacgttatcttccgagaactgggccatgtcgctgctcga
gatttcttctcagcggtgcaaagggttgttaactattggttactgcactacggtttctcc
gtcggtatcggtgacaccattgttgataaggcgactatggcgggtatcaccaaccgaatg
gtggaagccaaggaagctgtccaaaagttgatccaagaagctgaagcgaaccgaatgaag
cccaagcccggtatgactatccgagaaactctcgaagcatctatagccgcagagcttaac
aaggcgcgtgattggactggtaagacgactcaggataacctcaaggcggacaacaatgtc
aagcagatggtggtgtctggtgccaagggttcgttcattaacatctcccagatgagtggt
gttgtgggtcagcagtttgttgaaggaaagcgtatcgcgttcgggttccgacaccgatca
ttaccacacttctcaaaagacgactatgggcctgagtctcgaggtttcgttgaaaactca
tatttgcgtggtttgactcctcaggaattctggttccacgctatgggtggtcgagaaggt
ttgattgatactgctgtcaagactgccgagactggttatatccaaagaagattggtcaag
gcgatggaggacttgaaggttgcttatgacggtactgttagaaatagtgtgaatgaggtt
gtgcagttcttgtatggcgaagacggtatggacggtgctgcaatggagaagcagagtttg
gatattatccgactatctgatcgagcgtttgagaagcgatataagattgatgttcttggt
gccaatggcttctccaagggggttcttcaggccggtatcgaccaatcatccatctctctt
caaaagctcctcgacgaagagtttgctcaaatctccgacgaccgtcatatccttcgttcc
gaaatttaccaggacggtacccccggtcaccccctacctgtcaacattcaacgtgtcatc
cagaattctcagcagatcttccacattgaccctcgtgttccctctgaccttgatcccgtt
tacttgctcgaacaaagagaggcgctggccgagagactgcttgtggtgcgaggcgatgac
aagctttcaagagcggcgcagaaaaacgctacccttgtgttcaacatgcttttgcgatcc
caccttgccacgcgtcgagttctggaagagtaccaccttaacagggaggcgttcgactgg
gtcatcggagaagtggaacaaatcttcaacaaggctgttgtcaatgctgccgaaatggtt
ggtacgcttgctgctcagtctattggtgagcctgccactcagatgacgcttaacacattc
cattatgcgggtgtggcgagtaaatctgtgactggtggtgttcctcgtctgaaggaaatc
atcaacgtcgctatcaacattcgaactcctgctttaaacgtctatctcgatcccgagtac
agtaagaccgaagaggatgcgcatcagatcatgcgaaagttgacgtacactcgattgaga
gatattactgccactgttgagatcttctacgaccccaagcttgactctacggatattgag
gaagacaaggactttgtggacgcgttcttcgctattcctgatgaagacattagactggag
cttcattccccttggctattgcgtcttgagcttgaccgagccaaggtacttgaaggtggt
tatgaaatgtcgcagattgttgatgccattgccgacaccgtgggcaaggacgtctttgtt
attcactctgaagacaacgctcccaagcttgttattcgtattcgagtcgttgctgagaag
gaggatgaagaactgttgggtgacgaggacatgttcctcaaaagaattgaaggcaccttg
ctcgaccaagttgagcttggtggtatcactggtatcactcgagttttcatctcggaaggc
aagcaggttgttatttctcagaacggtgaatacgatcagcagaaggaatggttcctcgaa
acggacggtataaacctcaaggaagttatggctgttgatggtgtcaacgctttcagaact
tactccaacaactgttacgaagtctacgagactcttggtatcgaagctgcccgaaacgct
ctctataaggagcttaacggtgttattgagatgggtggttcctacgtcaactaccgacat
cttgcgctgttgtgtgatcttatgtgcagcaagggtgctttgatgagtatcactcgacac
ggtattaaccgaactgatgctggtgctctctcaagagcggcgttcgaagagacggtggaa
atcttgcttgaggctgcggctgtgggtgatatcgatgactgtaagggtgtggcagagaat
gtcttgttgggtcagatggctcctatgggtactggtgcctttgatgtgtcacttgacatg
aacatgctcaaggatgtgattgttgaccaccgactgccggtgcagaacatgatggccgcg
ggcatggctggtggaatgactccaggaggagcgatgactccttatgacaatctgtcaccc
atgtggggtggagacaagggggccttgggtcatgcggcattctcacctatccaaagctca
gcgaacgacgaaggtggcaattttgcttatatgggttatggacaatcaccaatgcacggc
ggtatgtctccagcaggttactcgccttcatcgcctgctggatactcgcctacttcacct
ttcgctgttacaagcccggcatacagccctacttctccgtttgcgggtgccgcagcgggc
gcagcgtccccgtgggttggaagaggcgggtacggcgctaccagtcctgcttactccccg
acatctcctcaatattctcccacttctccccagttctctcctacatcaccatcattctct
ccatcttcacccacttattcaccagcttctccggcttatggcggtgcgggtgttggaaat
agggcatcaccttattcccctacatctccagcctacagcccgacaagcccaatgggtggt
attacgtctccgcagtacagtcctaccagcccgaggtacagtccgacaagtccggcgttt
tcacctacgagtccgtcgtacagtccgacaagccctgcgcccttccaggccaccagtccg
aggtattctcccaccagtcctcaattctctcccacttcgccaagctactctcctgccagt
ccagcttactcacctacaagcccccaatattcacctactagtcccgcctacagtccgacg
tcgccggcttacagcccgacatctccagcgtacggcggtgctgcccccaatggcggtacg
gcccaacagcaaaacggtccggcgagacctggatggggaaatgcggggggttacgggaca
tcgcctagctggaagagctag
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integrated database retrieval system
