Cryptococcus depauperatus: 91087327
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Entry
91087327 CDS
T10265
Symbol
L203_103116
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cdep Cryptococcus depauperatus
Pathway
cdep03008
Ribosome biogenesis in eukaryotes
cdep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
91087327 (L203_103116)
09123 Folding, sorting and degradation
03018 RNA degradation
91087327 (L203_103116)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdep03021
]
91087327 (L203_103116)
03019 Messenger RNA biogenesis [BR:
cdep03019
]
91087327 (L203_103116)
03009 Ribosome biogenesis [BR:
cdep03009
]
91087327 (L203_103116)
03016 Transfer RNA biogenesis [BR:
cdep03016
]
91087327 (L203_103116)
Transcription machinery [BR:
cdep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
91087327 (L203_103116)
Messenger RNA biogenesis [BR:
cdep03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
91087327 (L203_103116)
Ribosome biogenesis [BR:
cdep03009
]
Eukaryotic type
Pre-60S particles
RNases
91087327 (L203_103116)
Transfer RNA biogenesis [BR:
cdep03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
91087327 (L203_103116)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
91087327
NCBI-ProteinID:
XP_066068619
UniProt:
A0AAJ8JT86
LinkDB
All DBs
Position
3:join(2107192..2107194,2107241..2107409,2107460..2107609,2107657..2109472,2109520..2109723,2109770..2110082,2110131..2110940)
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AA seq
1154 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVTRVKEDFPKKVRGSDGELMEEPIRYENPNPNGFEVDNLYLDM
NGIVHPCTHPEGKPAPETEEEMMVEIFKYTERVVNMCRPRKVLMLAIDGVAPRAKMNQQR
SRRFRAAQEAADKEEEHREAIKLFEAMGHPVSEETANKKGWDTNAITPGTPFMTLLSISL
KYWVSHKLTTDPGWKNLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHIIYGLDA
DLIMLSLATHEPHFRVLREDVFAQSSKGPQPCRNCGKPGHLSANCKSEKKVKDPNVVEVS
KPEDPKPFIFLDVACLREYLAIELNVSHVPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL
EIREGAIDVLLKIWRAELPRMGGYVTNHGKVNLERAQVILEGLAKSEDEIFQKRKQDEER
QEHSQKRRRIDEHKRQDDEEAREKGVMNVNGTEYVAVSNPAATARGGALHPSLPTRPSFD
LVPKNEVEKTQSNNEDDKVKRAMAGSNSDIVKNRRAIRMANMSAAQALKAELDGDLNDTE
VNLDQDEEAKEQKGTDQDKSSISLKQTQSDGEERAIKQETQEKRSNPEDVVNSMPVFINE
NKSQKEVPEDESVVADVDTNTENAAIDGEEDSTIIPHKRKRSEDAEENDDEDNDAEVPLN
SEDQPDSKKKLKVNADGTVDYTDDVRLWEPGYRERYYEKKFGVDLGNREFLDSITKAYME
GLCWVLEYYYQGVPAWDWYYPYHYAPFAQDFQNVGSMEISFEISMPFKPFAQLLGVFPAA
SRIHLPEPLQTLMINEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLDALKSK
EDELSDDEKRRNTWGDNLMFVANDNTLFDVFCDKLYGLRAKDVTKPVPIDPSTSMGMSGA
VLPDPNCVPSSSFDTPLPTIPECPDLNPNDSISVRYYFPRQASPHRSILLRGYESEPPRL
TESDKDWVRRGGQGGRRGPRHSGADGTSSKQPSGGPGVARGRYESGPGRSSHGYTPPSGR
QVYSNTSSSSYGYSTPHSMPLPPRPPVPVYGGGSYSYGNANPYAAAPPNASSYAGYSGST
SYTSNGVYGHGNNGQKAPYPPANPYAAAQPSAYGVQRAGGGYGYGAPPRGSEGAYNPYGN
GTYQPRNGPPPRRY
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccagcactgttcagatggctgtcaaaaaagtatccaaaaattgtaacccga
gtcaaagaagactttccgaaaaaagtcaggggatcggatggagagttaatggaagaacct
ataagatatgagaatcccaaccctaatgggtttgaggtggacaacttgtacctggacatg
aatggtattgtgcatccatgtacgcatccagaaggaaaaccggcgccagagacagaagaa
gaaatgatggtggagattttcaaatatacagagagagtagtcaacatgtgcaggcctaga
aaagttttgatgctggctatcgatggtgtcgctccaagagcaaaaatgaatcagcaaaga
tcccgtcggtttagagccgcacaagaagccgcagataaagaagaagagcaccgtgaggct
atcaagcttttcgaagccatgggccaccccgtatcagaagagactgcaaacaaaaagggt
tgggataccaatgccatcacacccggcacaccatttatgactttgctatcaatctctctc
aaatactgggtctctcataagcttacaacagatcctggatggaaaaatcttaaaatcatc
ctgtcggactcttccgtccctggtgaaggtgaacacaagattatggattggatccgtcga
cagagaagttatcctacatgggatgccaatacatcgcacattatctatggtcttgatgcc
gacttgatcatgctttcactcgctacacacgaacctcatttccgcgttctgagagaagat
gtttttgcacaaagttccaagggtcctcaaccatgtagaaactgcggtaagccgggacat
ctctctgcaaattgcaagagtgagaagaaagtcaaagatcccaacgtggttgaggtgtct
aaacccgaagatccaaagcctttcatctttcttgatgttgcttgtctgagagagtacctt
gccattgaattgaatgtctctcatgttccatttcccttcgatcttgagcttgcgatcgac
gactggatcttcatgattttctttgttgggaacgactttttgcctcatttgcccagctta
gagattcgtgaaggtgccattgatgttcttttaaagatttggcgggcagagctgccgagg
atgggaggatatgttactaaccacggcaaagtcaatcttgaacgagctcaagtaatactt
gaaggtctagccaaatcggaagatgagattttccaaaagagaaaacaggacgaagagcga
caagaacattctcaaaaacgacgaagaattgatgaacacaagcgtcaggatgacgaagag
gctcgagagaaaggtgtcatgaatgtgaatggaacagagtatgttgcggtcagcaatccc
gccgctacggctcgcggtggtgctctccatccttctctccccactcgtccaagttttgac
cttgtgcccaaaaatgaggtcgagaagactcaaagtaacaatgaagacgacaaagtcaag
cgcgctatggcaggaagtaattccgacattgtcaagaacagaagggctattcgaatggca
aatatgagtgctgcacaagccctcaaggctgagttggatggtgatctgaacgatacagag
gttaatttggaccaagacgaagaagccaaagaacaaaagggaacagatcaagacaagagt
agtatttctcttaaacaaacacagagtgatggagaggagcgagcaatcaagcaagaaaca
caagaaaaacgaagcaatccagaagatgttgttaattcaatgcctgtatttatcaatgaa
aataaaagtcagaaagaagtcccggaggacgagtccgtcgttgcagatgtagatacaaac
actgagaatgctgccatagatggcgaagaagactccaccataataccgcataaacgcaaa
aggagtgaagatgctgaggagaatgacgatgaagataatgatgctgaggttcctcttaat
tctgaggatcaaccagactccaagaagaaacttaaggtgaacgctgacggcacagtcgac
tatactgacgacgtgaggctgtgggagccaggatatagagaaaggtattatgagaaaaaa
ttcggagttgatctaggcaacagagagttcttggacagcatcaccaaagcttatatggaa
ggtctttgctgggtgcttgagtattattaccaaggcgtacctgcatgggattggtattat
ccctaccattatgctccgtttgcgcaagatttccagaacgttggatcgatggaaatcagc
tttgagatcagtatgccgttcaaaccatttgctcagcttttgggagttttccctgcggct
tctcgcattcatcttcctgagcccctccagaccttgatgattaacgaagactcccccatc
cttgatttctacccccctgactttgaaattgatatgaacggaaagaagatggcatggcaa
ggtgtcgcacttttgccttttattgaccagaaccgtcttttagatgcgctcaaaagtaaa
gaagatgagttatcagatgacgaaaagcggaggaatacttggggagacaacctcatgttt
gttgcaaatgacaatacgctgtttgatgtgttttgtgacaaattatatggcctgagagct
aaagatgtaaccaagcctgtgcctattgatccgtcgacatcgatgggtatgtcaggcgct
gtccttcctgatcccaattgtgttccatcgtcttccttcgatactcctctccctactatt
ccagagtgccctgatttgaatccaaacgattccatctccgtacgatattattttccccgc
caagccagtccacatcgttctatccttttacgcggctatgaatctgaacctcctcgactt
acagagagcgacaaggattgggtcaggcgtggtggacagggcggtcgacgaggacctcgt
cattctggcgctgacgggacatcctcgaaacagccatctggcgggccaggtgtagcaaga
ggaaggtatgaaagtggacctggaaggtctagtcacggatacactccaccatctggtcga
caagtttactccaatacttccagctcttcttacgggtacagtacacctcattcgatgcca
ttgcctcctcggcctcctgtaccagtgtatggaggtgggagttacagttatggaaatgca
aatccatatgcagctgcgccgccaaatgcaagttcttacgccggatatagtgggtcgaca
tcctataccagcaatggagtatatggacatgggaacaatggacaaaaggcgccttaccca
ccagcgaatccttatgcagctgctcagccatctgcatatggtgttcagagggcaggcgga
ggttacggatatggggcacctcctaggggaagcgaaggggcctataatccctatggaaat
ggtacttatcaaccgagaaatgggccaccaccccggaggtattag
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