Cryptococcus depauperatus: 91088219
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Entry
91088219 CDS
T10265
Symbol
L203_104009
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cdep Cryptococcus depauperatus
Pathway
cdep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
91088219 (L203_104009)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdep03019
]
91088219 (L203_104009)
03041 Spliceosome [BR:
cdep03041
]
91088219 (L203_104009)
03009 Ribosome biogenesis [BR:
cdep03009
]
91088219 (L203_104009)
03016 Transfer RNA biogenesis [BR:
cdep03016
]
91088219 (L203_104009)
Enzymes [BR:
cdep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
91088219 (L203_104009)
Messenger RNA biogenesis [BR:
cdep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
91088219 (L203_104009)
Spliceosome [BR:
cdep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
91088219 (L203_104009)
Complex C
U4/U6.U5 tri-SnRNP related factors
91088219 (L203_104009)
Ribosome biogenesis [BR:
cdep03009
]
Eukaryotic type
Pre-60S particles
Helicases
91088219 (L203_104009)
Transfer RNA biogenesis [BR:
cdep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
91088219 (L203_104009)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
91088219
NCBI-ProteinID:
XP_066069496
UniProt:
A0AAJ8JUU6
LinkDB
All DBs
Position
4:join(1787039..1787380,1787429..1787683,1787733..1787937,1787985..1788778,1788828..1789092,1789142..1790106,1790161..1790361,1790417..1790586,1790636..1790648)
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AA seq
1069 aa
AA seq
DB search
MADYGAGEGSFDPSGQQPQIKKRSTKEKDSSPSPRSTKTARIDGDNTGDEDNPIETLENG
AAKDPMELLDEKNDEKPIVEDEYEVIAEREVEASKEILETASGESGSKMKLVHQVRHRVA
VPPQYPYIPINQHKRFDPPVRTYKFELDPFQFVATSCIERNESVLVSAHTSAGKTVVAEF
AIATCLKEGRRVVYTSPIKALSNQKYREFLETFGDVGLMTGDVTINPSASCLVMTTEILR
SMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNSMEFA
EWICSTHEQPCHVVYTDFRPTPLQHYLFPAGSDGIYLVVDEKSNFREDNFQKAMAALAMG
QGEDPADPNSGKGKKGKTRKGGALKGEKSDIYKIVTLIMRRNLNPVIIFAFSKRDCEDLA
MQMQKFDFNSPDEATTVGQVFENAIGSLSEDDRKLSQIEGILPLLKRGIGIHHGGLLPIL
KEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFDGKEFRNLSGGEYIQMSGR
AGRRGLDARGIVIMMCDEKIDSDAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGVSPEY
MLERCFFQFQNSMSVPLLEKQLKEAEKERDGIVVEREDEIEEYYELRQQLKERGQDFQAV
ISHPAYCLRFLQPGRLVEIRDGEKDFGWGVVVAFNKVVNQRGRPPIWTEQDPPQKQYIVD
ILTKIASGSSVPKDRSVSELSPPIVEDKGEVAIIACSLSTIQAISQYRINLPKDLRGAQD
KNIAFRAVGEIKKRMPEGPPLLDPIKSMGIEDKSFKDLVKKIAILEQRLQSLDITKSPDL
PRQYDLYDRKQTVIATMKNLKKRINSVHDILQLEELKSRKRVLRRLGFTTANDVVEMKGR
VACEISTGDELMLTEMMFGGTFGTLSPEQCAALLSCFVFQEKSEAQVRLKEDLAAPLRTL
QETAKRIAKVSNESGIALVEDEYVASFKVEMMDVVLQWCKGAKFADICNMTDVFEGSIIR
CFRRLQELIRQMGQAAHAIGNTELEDKFTKSLEMLERPNTVVFNPSLYL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatggtgctggagaaggcagttttgatccgtcagggcagcaaccgcagatc
aaaaaaaggagtaccaaagagaaggactcttctccatctcctcgatctacaaaaaccgcc
agaattgatggtgacaatactggcgatgaagacaatcccatagaaacactcgagaacggt
gctgccaaggatcctatggagctgttggatgaaaaaaatgacgagaagcctatagtagag
gacgaatatgaggtaatcgcagagagagaagtagaagcgtcaaaggaaattttggaaacc
gcctctggtgaatcaggaagcaagatgaaactcgttcatcaggttagacatagagtggct
gtacctcctcagtacccatatatcccaatcaatcaacacaaacgcttcgatccccctgtc
cgtacctacaagtttgagctggatcctttccagtttgtagctacttcttgtattgaaaga
aacgaatcggtgttggtttctgctcatacgtctgctggcaagacagttgtagccgaattt
gccattgctacttgtctaaaagaaggtcgaagggtagtctataccagtcctattaaggca
ttgtcaaaccagaaataccgagagttcttggaaacatttggagatgttggattgatgact
ggtgatgtgacaatcaaccctagcgcttcatgccttgtgatgacgacagagattctacgg
tcaatgttgtaccggggttcggaagtcatgcgagaagttgcttgggttatttttgatgag
gttcattacatgcgggataaggaacgtggtgtcgtttgggaggagacgatcatccttctt
ccacactcagttcgatacgttttcctttctgccaccattcccaattccatggagtttgca
gaatggatatgctcaacccatgagcaaccatgtcacgttgtgtatacggatttccgaccc
accccactacagcactatcttttcccagctggttctgatggcatctatctagtggtcgac
gagaagagcaactttagagaggacaattttcaaaaagccatggcagccttggcaatgggg
caaggcgaagatcccgctgatccgaattctggaaagggaaagaaggggaagacaagaaaa
ggtggtgcgctcaagggcgaaaagtctgatatttacaaaattgtaaccctcattatgcgc
cgaaatctcaaccctgttatcatttttgctttttccaagcgtgattgcgaggacctcgct
atgcaaatgcaaaaattcgatttcaacagtcccgatgaagctactaccgttgggcaagtc
tttgaaaacgccattgggtcactttccgaggatgatcgaaagctttctcaaattgagggg
attttgcccttgttgaaaaggggcattggtattcatcatggtggcttgttgcccattctt
aaggaagttattgagattcttttccaagaaggcctgattaaggctctatttgctacggaa
actttttctattggtctcaacatgcctgcgaaaactgtggtatttacaagcgtgagaaag
tttgatggtaaggagtttaggaaccttagtggtggagaatatattcaaatgtctggtcga
gctggtcgtcgaggtcttgatgcacgaggtatcgttatcatgatgtgcgacgaaaagatc
gactcagatgctgcaaagggtatggtcaaaggtcaggctgatcggcttgactcggccttc
catctaggttacaacatgattattaatttgatgagagttgaaggtgtcagtcctgagtac
atgcttgagcgctgcttctttcaattccaaaattccatgagtgtgcctctattagaaaaa
caattgaaagaggcagagaaagagcgggacggaattgtggtggagagggaggacgaaatt
gaagaatactacgagcttcgacaacagctgaaggaaagaggtcaagatttccaagctgtg
atcagtcatccagcttactgccttcgatttctccagcctgggcgactggttgagatacga
gatggtgaaaaagactttggctggggtgttgttgttgcttttaacaaggtagtgaaccaa
agaggccgtccacccatctggactgagcaagaccctccacaaaaacaatacattgtggac
atactcacaaaaattgcttctggtagctctgtacccaaggatcggtctgtttctgagctt
tccccgcctattgtcgaagataaaggtgaagtcgccattattgcctgttcactttccacc
attcaagccattagccaataccgtatcaatctccccaaagacttgcgaggagcccaggat
aaaaacatagcattcagggcagttggcgaaatcaagaagaggatgcctgagggcccacct
ctcctggatcctatcaaaagcatgggtattgaagacaagtctttcaaggatctagtcaag
aagattgctattcttgaacaacgcctgcaatctcttgatattacaaaatcgcccgacctt
ccacgtcaatatgacctctatgaccgcaaacagacagttatcgctaccatgaaaaacctc
aagaaacgtatcaactctgtacacgacatccttcagttggaagaactcaaatctcgaaag
agggtcttgagaagattaggattcacaacagcgaatgatgtcgttgaaatgaagggacga
gtagcttgtgaaatatcaactggagacgaattaatgttgacagagatgatgtttggaggg
acttttggaacattatcacctgaacagtgtgctgccttgttgagttgctttgtgtttcag
gaaaagtccgaggcacaagtgagattaaaagaagatctggccgcaccattgcgaacactg
caagaaacagccaagagaatagccaaagtatctaacgagtctggtatagcgttggtggag
gacgagtacgtcgcaagcttcaaagtggaaatgatggatgtggtgctgcaatggtgcaag
ggtgccaaattcgctgatatctgtaacatgactgacgtctttgagggatccatcatccga
tgctttagacgtctgcaagagcttatccgtcagatgggccaagctgcacatgccattgga
aacactgaacttgaagacaagtttacaaaaagtttagagatgcttgaaagacccaatact
gtcgtcttcaacccttcattgtacttgtaa
DBGET
integrated database retrieval system
