| Entry |
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| Symbol |
L203_104110
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| Name |
(RefSeq) uncharacterized protein
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| KO |
| K12571 | PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] |
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| Organism |
cdep Cryptococcus depauperatus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cdep00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
91088320 (L203_104110)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cdep03019]
91088320 (L203_104110)
Enzymes [BR:cdep01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
91088320 (L203_104110)
Messenger RNA biogenesis [BR:cdep03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
91088320 (L203_104110)
mRNA degradation factors
3'-5' decay
Pan complex
91088320 (L203_104110)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4:join(2033335..2033660,2033719..2034882,2034934..2035184,2035235..2035575,2035636..2035972,2036038..2036257,2036310..2036415,2036472..2036727,2036775..2036834,2036884..2037356)
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| AA seq |
1177 aa
MNYNPLYLLSIPPTPLDAKPYPTALSVDPFSNVLWVGSSSGLVSALCSPLALTRNVQFPA
HGYKSAGAFGQQGSAAVRELRVTDRDVWTLTEGGVGGRRRGGMTKWTVSDPIRSLRTMSP
NPTNSHELLAGGTGSLLLANTARGEVIRRIDHSTAVIKLAPLHRTVLAAGLSGQITVLDP
RTGFKSAQNVNPAQAHTGGLSGADVQGNIIATWGWTHMQGHPLPDPLIRLYDVRALRPLP
PISFPSGPTFVLLHPSSSSHIVVSSQQGMLQNIDMSLGPSATVFQQLDVATYVTSMTLSN
RGDYLAAGDADGKLHLCTTHEIGENAVLDDSGNIDLPPFNGYDGTKPEWPDPTDPPAQIN
WQDTTPLNLIGMPYYTEPLLSQIPNSCYAHSSSPLYNPPVPIPQNVLGSMKMVDFVGYAP
NPKEFKGKRYVRKANPSAEARIKGRRRDEPRFRSEKLQEEDEQEEEDENTGDGKVPKYYR
KVEIKYSKFGIEDFDFEFYNRTEYSGLETDILNSYTNCLLQALHYTVPIRKVATAHICVD
CKKEHCLLCEAGFLFRMLGDARGRNCQASNFSRAFSATSQAYALGLMDDTTNPSSSPSYS
SLIQNFNRWLLSTFSTESVINDRNFDILRPTNMLKSDQDCVTALGELVVQDRPSAIDQLL
GVHTQTANTCKNCGHTTLRDTVLHTVDLVYPKKLDLQLTFADLLHYSIVRDSFTKTVCSS
CKCFAPLETKRQLQAELPPILSVNTSSTGDILAWWGDQPFRRKDENRTFFPDKMVVREGI
EYEVRAMVVQIQDTPDTPAHLVSFAKMPEKDANGQDKWVLFNDFLVRPVPSSEVFSFNGS
WKTPSIVILERTDSLQLLDLQRLPKELDSEVLFKDHCISWKRKKNMIKHKVLAKNEMPHQ
GMLVAIDAEFVALQQEEMEFRSDGTKSILRPSHMSLARVSVLRGEGKNEGKPFIDDYIMT
NVEVVDYLTEFSGIKPGDLDPNTSPHTLVLLKVAYKKLRLLVDLGCIFVGHGLSKDFRTI
NIFVPPEQVMDTVLIYTIPSRQRKLSLRFLAWYLLHTDIQTASHDSIEDARYALLLCKLW
QDYESEGVFENIMEEMWTEGRRIGFKPPNATASEGTTERPLVPSAFAGGVGEQVVRMQAA
QGNTAAQLGIMTPRTPPSTNKLALPAWTPQQSPSPRR |
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| NT seq |
3534 nt +upstreamnt +downstreamnt
atgaactacaaccctctttatcttctctcaattcctccaactcctcttgatgccaaacca
tatcctactgccctaagtgtagacccattttcaaatgttttatgggttgggtcatcatcc
gggctcgtctctgccctttgctcgcctctagcgttgacaaggaatgttcagttccctgcc
catggatacaaatcagcaggcgcgtttggacagcaaggctcggctgctgttagagagtta
agagtgacggatagagatgtctggacattgacagagggcggggttgggggaagaaggcga
ggaggtatgaccaagtggactgtctcagatccgatacgctcgttacggacaatgtcaccc
aatccgaccaattcacatgaacttttggccgggggtactggatctcttttactagctaat
actgctcgcggagaagtcattcgtcggatagaccatagtacggcagttatcaagcttgct
ccgttacaccggactgttttggcagcgggtctttcgggacaaataactgtactcgaccca
cgaacaggcttcaaatctgctcagaatgtgaacccggcacaagctcataccggtggcctg
agtggtgcagatgtacaagggaatattatcgcaacgtggggttggacacacatgcaaggc
catcccttgcctgatcctttaatcaggctgtatgatgttcgagccctacgacctttacct
cctatctcttttccttctggtccaacatttgtcctcttacacccttcctcgtcctcacac
atcgtggtatcttcccagcaaggtatgcttcaaaatatcgacatgtctcttggtccgtcc
gctaccgtctttcaacagctggatgtagcgacctacgtgaccagcatgactctttccaat
aggggagattaccttgccgccggtgatgcggatggtaaattgcatttatgtacgacgcat
gagattggagaaaacgctgtactggatgattcaggtaacatcgacctccctccattcaat
ggttacgatggtacaaaacctgagtggcctgaccccaccgatcctccagctcagatcaat
tggcaagacacgacgccgttgaatttgatcggtatgccctattacactgagccccttctc
agtcaaatacccaacagctgttatgctcattccagtagtccattatacaatccacctgta
cccattccacaaaatgtcttagggtctatgaagatggttgactttgttggatatgcacca
aacccaaaagagttcaagggaaagcgatatgtgaggaaagcaaacccttccgcagaagcg
agaataaaaggaaggaggagagatgagccgaggtttcggagtgaaaagctgcaggaagag
gacgagcaggaagaagaagacgagaatacaggggacgggaaagtgccaaaatactatcga
aaggtcgaaatcaagtattcaaagtttggcattgaagattttgattttgagttttacaat
cgaacagaatactctggccttgaaactgatatactcaattcctacaccaattgcctttta
caagctcttcattatactgtgccgatacgaaaagtggctacagctcatatctgcgtagac
tgcaagaaagaacattgtttattatgcgaagcaggtttcctgtttagaatgctgggtgat
gcaagaggacgaaactgtcaagctagcaacttctcgagagcttttagcgcgacgagccaa
gcctacgccctcggtttgatggatgatacaacaaacccatcttcgtctccttcgtacagc
tctttaatacagaatttcaaccgatggttactgtcaactttctctaccgaaagcgtcatc
aatgacagaaatttcgatatattacgacccactaatatgcttaaatctgatcaggactgt
gtgacagctctgggggagctggtcgtgcaagacaggccttcagctattgatcagcttttg
ggtgtgcacactcagactgctaatacttgcaaaaattgtggacacactactttgcgagac
acagtgctacatactgtcgacttagtgtatcctaagaaactggacttacaattgaccttt
gctgaccttttgcattactcaatcgtccgagattcattcactaaaacagtttgctcttca
tgcaagtgcttcgcacctctggaaaccaaaagacagcttcaagcagaactaccgcctatt
ttgagtgtcaacacgtcgagcacgggtgacattctcgcatggtggggagatcagcccttt
agaagaaaagacgagaacaggaccttctttcctgacaagatggtagtgcgtgaaggaata
gagtatgaggtgagagcgatggtggttcaaatccaagacactcctgatacgccagcacat
ctggtatcttttgctaaaatgcctgaaaaagatgcgaatggccaggacaaatgggttttg
tttaatgatttcctcgttcgacctgtaccctcttccgaggtattctctttcaatggttca
tggaaaacgccatcgattgtcattcttgaaaggacagattctttgcagctgcttgatctg
cagcggttacccaaagagttggatagtgaggtgttgtttaaagatcactgcatctcttgg
aagagaaagaagaacatgatcaaacacaaggtgttggcaaagaatgaaatgcctcaccaa
ggcatgctagtcgcgattgacgcagagtttgtcgctcttcagcaagaggagatggagttt
cgttctgacggcacgaagagcatactgcggccatcacacatgtctttggcgcgggtttct
gtacttcgtggggagggtaaaaatgaaggcaaaccatttatcgacgattatataatgaca
aacgtggaggtagtcgattacctgacagaatttagcggcatcaagcctggggatttggac
ccaaatacatcaccacatactcttgtcctactgaaggtagcatataaaaaattgaggtta
ttggttgatcttgggtgtatctttgttgggcacggtttatcaaaagatttccgaacaatc
aatatatttgttccgccagaacaagtcatggacactgtcttgatctacaccattccgtct
cggcaacgcaagctctcactccgtttccttgcatggtatctccttcacactgacatccag
acagcatcgcatgactcgatagaagacgcacggtatgctctgctgctttgcaagctatgg
caggactatgagtctgagggagtgtttgagaacatcatggaagagatgtggaccgaaggg
agacgaattggatttaagccacccaacgccactgctagcgagggcacaaccgagagaccg
ctggtgcccagcgcctttgctggcggagtgggagagcaagtcgtgaggatgcaagccgct
caggggaatactgctgcccaactaggtatcatgacgcccaggacgccgccgtctacgaac
aagctggcgctaccagcatggacaccccaacagagtcccagtccgagacgctag |
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