Cryptococcus depauperatus: 91088465
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Entry
91088465 CDS
T10265
Symbol
L203_104255
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cdep Cryptococcus depauperatus
Pathway
cdep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
91088465 (L203_104255)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdep03021
]
91088465 (L203_104255)
03019 Messenger RNA biogenesis [BR:
cdep03019
]
91088465 (L203_104255)
Transcription machinery [BR:
cdep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
91088465 (L203_104255)
Messenger RNA biogenesis [BR:
cdep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
91088465 (L203_104255)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Torus
zf-CCCH
zf-CCHC
zf-CCCH_4
zf-CCHC_2
zf_CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
91088465
NCBI-ProteinID:
XP_066069739
UniProt:
A0A1E3I7R4
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All DBs
Position
5:complement(join(284027..284125,284177..284507,284552..285138))
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AA seq
338 aa
AA seq
DB search
MAAASNSVPLDPKLGRAADFVRPDFHQVNLDLEGYLKSERGFKLDADQQICPLSITPLGC
PLPPSQCPYRHTTPGSTNFQPPPPLPSHPREREKKLTVCKHYLRNLCKMGDNCEYTHDFN
LRTMPICIWFVKQGKCELGGECLYFHPRDRRVSCPDYDRGFCVLGPRCPRRHVRTRLCEA
YAAGFCPDGKDCKLAHPIPGQPPSESYVNPTPPNPEMFTGPPPQLPAGYGRWREYKYDPN
AVVVPAVAWVEGGSLSGWRAGGFLSANARRQQQSGGGASGGGPGGAGDGGPRKGGWQKDL
SQVLCFRCNQHGHFANNCPNQYVPGDRGGKRKNNDDGF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcttccaactctgtcccactcgatcccaaattgggcagagcagcagacttt
gtccgtccagattttcaccaagtcaacctcgacctcgagggatatcttaaatctgaacgt
ggattcaaactggacgctgaccaacaaatctgtccactgtccattacccctcttggttgc
cctcttcctccttcacaatgcccatatcgacatactactccaggttctaccaactttcag
ccacctcctcccctcccgtcccatcctcgtgagcgcgaaaagaaattgactgtctgcaaa
cactaccttcgtaacctctgcaaaatgggcgacaactgcgaatatacccatgatttcaac
cttcggaccatgcctatctgtatatggtttgtcaagcaaggaaaatgcgagctgggcggt
gaatgtctgtactttcacccccgcgatagaagggtatcatgtccagactatgataggggc
ttttgcgtactggggccgcgttgtccaaggagacatgtgaggacaagactgtgtgaggcg
tatgcggcaggattctgtccagacggtaaagactgcaaactcgcgcacccaataccggga
caacctccctccgaatcatacgttaatcccactccgcctaatcctgagatgttcacgggt
cctccacctcaacttccagcagggtacggccgttggcgagagtacaagtacgatcccaat
gccgtagtggtccctgcagtagcatgggttgaaggcggctcgctgtccggttggagagct
ggaggcttcttatcagcaaacgctcgaaggcagcaacaatctggcggaggggccagtggt
ggcgggcctgggggagccggagatgggggaccaagaaaaggtggatggcagaaagatctc
agtcaagtactttgctttagatgcaatcagcatgggcatttcgcaaacaactgtcctaat
caatatgtgcccggtgacagaggaggcaagagaaaaaacaatgatgatgggttttag
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