KEGG   Cryptococcus depauperatus: 91089016
Entry
91089016          CDS       T10265                                 
Symbol
L203_104807
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cdep  Cryptococcus depauperatus
Pathway
cdep03013  Nucleocytoplasmic transport
cdep03015  mRNA surveillance pathway
cdep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cdep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    91089016 (L203_104807)
  09122 Translation
   03013 Nucleocytoplasmic transport
    91089016 (L203_104807)
   03015 mRNA surveillance pathway
    91089016 (L203_104807)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdep03019]
    91089016 (L203_104807)
   03041 Spliceosome [BR:cdep03041]
    91089016 (L203_104807)
Enzymes [BR:cdep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     91089016 (L203_104807)
Messenger RNA biogenesis [BR:cdep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     91089016 (L203_104807)
Spliceosome [BR:cdep03041]
 Complex C
  Other components
   EJC/TREX
    91089016 (L203_104807)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    91089016 (L203_104807)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 Ned1_M AAA_19 CMS1
Other DBs
NCBI-GeneID: 91089016
NCBI-ProteinID: XP_066070280
UniProt: A0AAJ8M2K4
LinkDB
Position
6:join(196649..196750,196827..196845,196901..197075,197323..197390,197440..197548,197596..197897,198411..198529,198580..198821,198874..198982,199031..199103,199153..199274)
AA seq 479 aa
MTDGSSTWTKHLREGCLLGNPNSPHEKNAETPEVVVLRFIVYLCSTAENTMSRLDEEELV
DYDEAAEILPSAPATATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPS
EVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVSIVILCHTRELAYQI
KNEFTRFSKFMTNVRTGVFYGGTPISADQETLASKEKCPHIVVGTPGRTMALVRDKKLNA
SKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPL
EIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDQLEFNQVCIFVKSVQRATQLDALL
QESNFPSICIHSGLPQTERISRFQQFKAFEKRILVATDIFARGIDVERVNVVINYDAPAD
ADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQKIQERFTVAIPTLPETVDPATYMTS
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgacggatggtagctcaacgtggacaaaacatctcagggagggttgcctattggggaac
ccgaattcgccacacgaaaaaaacgccgaaacaccggaggtagttgttttgcgctttata
gtttacctttgctcaaccgctgaaaacacaatgtctcgtctcgatgaagaagagctcgtt
gactacgacgaggccgcagagatcttaccttctgctcccgctacggcgaccaacggagac
aaggcggatggcgacaagaaggggtcttatgtcggtattcactcgaccggttttagggat
ttcctgttgaagcccgagcttcttcgtgcaatctctgacctcggttttgagcatccttct
gaagtccagcaagaatgtataccccaggctatactgggtacagatgtcctctgtcaggca
aagtctggtatgggtaagacggctgtgtttgtgcttgcctgtttgcagcagattgaaccg
gtcgatggcgaggtttccattgtcatcctttgtcacactcgtgaactcgcttaccagatc
aagaacgagtttactcgattctccaaattcatgaccaatgtccgaacaggtgttttctat
ggtggcacacctatatctgccgaccaggaaactcttgctagcaaagaaaagtgtccacac
atcgttgtcggtactccaggccgaaccatggcgcttgtcagggataagaaattgaatgcc
agcaaagtcaagcactttgttcttgacgagtgcgacaagatgctcgaacaacttgatatg
cgacgagacgtacaagaaattttccgagccactcctcaccacaagcaagttatgatgttc
tccgccactctttccaaggacattcgagcaacttgcaaaaaattcatgcagagtcctctt
gaaatttatgttgatgatgagacaaaacttaccctccatggtctccaacagttttatttg
aagcttgaggaacgagaaaagaaccgaaaacttaacgatctgctagaccaactcgaattc
aatcaggtttgcatctttgtcaagtctgtgcaaagagcgactcagttggatgcgttgttg
caagaatccaatttcccttctatttgtattcactctggtttgcctcagactgagcgtatc
tctcgattccaacagttcaaagcttttgaaaagcgtatccttgtcgctaccgacatcttt
gctcgaggtattgatgttgagcgagtaaacgttgtcatcaactacgacgctcctgccgat
gccgattcttatctccacagagttggtcgtgctggccgtttcggtacaaagggtttagcc
atcagttttgtttcttcggatgccgatcaagaggtccttcaaaagatccaagagcgattc
accgttgccattcccactttgcctgagactgtcgaccctgctacttatatgacttcgtaa

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