Cryptococcus depauperatus: 91089666
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Entry
91089666 CDS
T10265
Symbol
L203_105457
Name
(RefSeq) mRNA cleavage and polyadenylation factor Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cdep Cryptococcus depauperatus
Pathway
cdep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
91089666 (L203_105457)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdep03019
]
91089666 (L203_105457)
Enzymes [BR:
cdep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
91089666 (L203_105457)
Messenger RNA biogenesis [BR:
cdep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
91089666 (L203_105457)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
AAA_16
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
91089666
NCBI-ProteinID:
XP_066070921
LinkDB
All DBs
Position
7:join(370761..370856,371168..371536,371588..371837,371886..372687,372752..372863)
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AA seq
542 aa
AA seq
DB search
MIEQGAQLTNLDMEAGSEWRFELEDGENIAVRSLTSDPLFINSQEIPPSSWYPIHRLTKS
SIYAPSPSRIQLTSIPSSQYTSTSTTQPQLINIHLALERLRILAKRGHEGIVGPRMMVMG
PLSSGKSTVVKNLVNMALGTGLGWTPGVVGLDPSSPPNLIPGTLSLSSPSHPLPTHHLAH
PLGSPPTSQPANTLSADVETVGWWLGALEPTTKNSDVWKVLVDNIAEGWRKRCEQDKKAN
ASGLFVDTPAAFCVPTLGTKKDDPKARYVLVNHAIQALNIDTILVIGHEKLHIDIIRLPL
IQSRGIQVIRIPKSGGAVDLDEHYREAAHRFQIRAYFYGEPTLPPEISSLVGKMVGLDPA
LTPYSSQISWKKLIILRVGEENAAPSTALPLGSAKVLSPTRLTRVDPSGEGHVVRLLNKV
LALVKIENEDRIVPTVKEEKQEGQQSEEEATSKDGEEGNGGERTEEEGEGEVTRTEEQKE
ESLDEEDEVPFKEEIGTREVMGYIVITAIDTFQQKYTVLSPNPGKLPSTIAIAGSIEWVD
ST
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagggagctcagcttacgaatctcgacatggaagctggctcagaatggagg
tttgaattagaggatggagaaaacattgcagtcaggtcgctaacatcagatccattgttt
atcaactcccaagaaatccccccatcatcttggtaccctatccatcgcctcacaaaatct
tccatctatgctccttctcccagccgtatccaactcacatctatcccttcttctcagtat
acatcaacttctacaacgcaacctcaattgatcaatatccaccttgccctcgagcgctta
agaatactggctaaacgagggcatgaaggcattgtgggtccgaggatgatggttatgggt
cccctaagctcgggaaagtctacagtagtgaaaaatttggttaatatggcacttgggacg
ggtttaggatggacacctggcgtcgttggtctcgatccctcaagcccgcccaaccttatt
cctgggactctatcgctctcttcaccctctcacccacttccaactcaccatctcgcccac
cctcttggttccccaccgacgtctcaaccggccaataccctttctgcggatgtagagact
gtcggttggtggcttggtgcattggagcctactacgaaaaactctgacgtttggaaggtg
ctcgttgacaatattgctgaaggatggcggaaacggtgtgaacaagacaagaaagcgaat
gcttcaggtttatttgtggatacccctgcagctttctgcgtaccaacccttggtacaaag
aaagacgatcccaaagctcgttacgttcttgttaatcacgccatacaagctttgaatata
gacaccatcctcgttatcggacatgaaaaacttcatattgacattattcgcttgcctcta
atacaatctcgcggaatacaagttattcgtatccccaagagcggcggtgccgtagattta
gatgaacattatcgtgaagccgcgcatagatttcagattagagcgtatttttatggtgaa
ccgactcttcctcctgaaatctctagtttggttggcaagatggtaggtctcgaccctgcc
ttgactccatattcgtctcagattagttggaagaagcttattattcttcgtgttggtgag
gaaaatgccgcaccttccacggctctacccctaggctccgcaaaagtcctctcacctacg
aggctaaccagagtggatcctagcggagaaggacatgttgtcaggctgttaaacaaagtt
ttagctctggtcaagattgagaatgaggatcgtattgtgcctactgtgaaagaggaaaag
caggaaggacaacaaagcgaagaagaagcgacgagtaaagatggagaagagggaaatgga
ggagaacgaacagaggaagaaggggagggagaggttacaagaactgaggagcagaaggaa
gaatcattggatgaggaggatgaagtgccgttcaaagaggagattgggacaagagaagtg
atgggatatattgttattaccgcgatagatacttttcaacagaaatatacagttctgtcg
cccaatcctggcaagctaccttcaactattgccattgccggatctatcgaatgggttgac
tcgacataa
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