Candidatus Chromulinivorax destructor: C0J27_03790
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Entry
C0J27_03790 CDS
T08204
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cdes
Candidatus Chromulinivorax destructor
Brite
KEGG Orthology (KO) [BR:
cdes00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C0J27_03790 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdes03021
]
C0J27_03790 (rpoD)
Transcription machinery [BR:
cdes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C0J27_03790 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AXK60840
UniProt:
A0A345ZC23
LinkDB
All DBs
Position
complement(769376..771274)
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AA seq
632 aa
AA seq
DB search
MIKKVAGKPTKYSKLSAMKDVAAAEKPISIEDAIKAFLDEGKKNRFVTYESVIEFGDEHK
FSEADANKFLKSIEKNNIELVMQEEISADPLFSADDMRTSNTDESASFTIGKINSTLYLQ
DDKDEEDEDDKEDKAETRHTSDSSQVADGVKCYLRDIGKIPLLNKATEAAIASKIASGKA
ESIRALSYFPIIHKELSIIGDKITKETIQLKDIIQFSEFDEENLPNLQEEKKYLLKIITK
IKKLIQNEKAIYVSYKGLLTTQAAKQEMLDKVRENKEEISVTISSIKLSNKLIRKLGKKI
DKGINKILERRRFVEKMNLTITSLKKSKDRDEEKQATINDYEVQARIATKTIRKAENELG
LPSAKSIEFYKKFLKGQAKDKQAKSDLAQANLRLVVNIAKKYVNRGLHFLDLIQEGNIGL
MKAVEKFEFERGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMVETLNKINKIKHSFLQ
DSGREPTYEELAKKLNLDEKKIKNIIKISKEPISLETPVGDSNDASIKDFIESENEFSPS
DIVANSDLKEKVREVLKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEV
KALKKLKHPSRSKKLQSFFEKEFNNTDVDDNE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaaagtagctggaaaaccaaccaaatactcaaagctatcagcgatgaaagat
gtcgctgcagctgaaaaacctatttcgatagaagatgctattaaagcatttcttgacgaa
ggtaaaaagaatcgttttgttacgtatgaatcggttatagaatttggtgatgaacacaag
ttttctgaagctgatgctaacaagttcttaaaatcaatcgaaaaaaacaatattgaactt
gttatgcaagaagaaataagtgctgatccattgttttctgcagatgacatgagaaccagc
aataccgatgagtcggcttcatttaccattgggaaaattaattcgacactgtatcttcaa
gatgataaagatgaagaagacgaagatgacaaagaagataaagctgaaactcgtcatact
tcagattcatcacaagtagctgatggtgttaaatgttatttacgtgatatcggtaaaatt
cctttgcttaacaaagcaactgaagctgcaattgcaagtaaaatcgcatcaggaaaagca
gaatcgattcgagctttatcatattttccgattattcataaagaactgtctattattggc
gataagataaccaaagagacaattcaactgaaagatattattcaattttctgagtttgat
gaagaaaacttaccaaatcttcaagaagagaaaaaatatctgcttaagattattacaaaa
attaaaaagctgattcaaaacgaaaaagctatttacgtcagctataaaggcttactaaca
acacaagctgctaagcaagaaatgcttgataaagtgcgcgaaaacaaagaagaaataagc
gttactatttcatctattaagttatctaataaattaattagaaaacttgggaagaaaatc
gataaaggtatcaataagattcttgagcgtcgtcgttttgttgaaaaaatgaatttgacg
attacaagtcttaagaaatcaaaagatcgtgatgaagaaaagcaagcgacaattaatgac
tacgaagttcaggctcgaattgcaacaaaaacaattagaaaagctgaaaatgaacttggt
ttgccgtctgcaaaatcgattgaattttacaaaaagttcttaaaagggcaagctaaagac
aaacaagctaaaagtgatttagcacaagctaacttacgacttgttgttaatattgcaaaa
aaatatgtaaaccgtggattacacttcttagacttgatccaagaaggaaatatcggttta
atgaaggctgtagaaaagtttgaatttgaacgtggttataaattttctacctacgctacc
tggtggatccgtcaagcaataacacgtgcaattgctgatcaatcaagaactattcgagtt
ccagtgcatatggtagaaaccttaaacaagatcaacaaaattaagcactccttcttacaa
gattcaggaagagaaccgacctacgaagaattagcaaaaaaacttaatcttgatgaaaag
aaaattaagaacatcattaaaatctctaaagaaccaatatcacttgaaactccggttggt
gatagcaacgatgcttcgattaaagattttattgaaagtgaaaatgaattctcaccttct
gatattgttgctaacagcgatttaaaagaaaaagttcgtgaagttcttaaaactttaact
cctcgtgaagaaaaagttttaaaaatgagatttggtattgatgttgcatcagaacataca
cttgaagaagttggtaaagatttttctgtaacgcgagaacgtattcgacaaatcgaagtt
aaagctttaaagaaacttaaacatccttctcgaagcaaaaagcttcaatctttcttcgaa
aaagagtttaataatactgatgttgatgacaacgaataa
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