Colletotrichum destructivum: 87937501
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Entry
87937501 CDS
T10409
Symbol
CDEST_00998
Name
(RefSeq) Putative cleavage/polyadenylation specificity factor, A subunit
KO
K12830
splicing factor 3B subunit 3
Organism
cdet Colletotrichum destructivum
Pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87937501 (CDEST_00998)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87937501 (CDEST_00998)
03041 Spliceosome [BR:
cdet03041
]
87937501 (CDEST_00998)
03036 Chromosome and associated proteins [BR:
cdet03036
]
87937501 (CDEST_00998)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
87937501 (CDEST_00998)
Spliceosome [BR:
cdet03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
87937501 (CDEST_00998)
Complex B
87937501 (CDEST_00998)
Complex C
U2 SnRNP specific factors
87937501 (CDEST_00998)
Chromosome and associated proteins [BR:
cdet03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
87937501 (CDEST_00998)
TFTC complex
87937501 (CDEST_00998)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
87937501
NCBI-ProteinID:
XP_062773208
UniProt:
A0AAX4HZ34
LinkDB
All DBs
Position
1:join(3328587..3328830,3328981..3331060,3331238..3332552)
Genome browser
AA seq
1212 aa
AA seq
DB search
MATTSNMFLYSLTLQPPTNVTQAVLGQFSGTKEQNIVTASGSRLTLLRPDPSQGKVITVL
SHDIFGIIRSMAAFRLAGSNKDYLILATDSGRITIIEYIPAQNRFQRLHLETFGKSGVRR
VIPGEYLACDPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVLSMVALD
VGYANPVFAALEIEYTEADQDPTGEAAREAETQLVYYELDLGLNHVVRKWSESVDPTASM
LFQVPGGQDGPSGVLVCGEENITYRHSNQEAFRVPIPRRRGATEDPSRKRHAVSGVMHKL
KGSAGAFFFLLQTEDGDLFKATLDMVEDADGNPTGEVKRLKIKYFDTIPVSSSLCILKSG
FLYAASQFGNHQFYQFEKLGDDDDELEFSSDDFPTDPKAGYDAVYFHPRPLENLALVESI
DSMNPLLDCKVANLTGEDAPQIYTACGNGARSTFRMLKHGLEVNEIVASELPGIPSAVWT
LKLNRGDQYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTSVPTLAAQLLGEDGLIQVHP
KGIRHIRHGHVNEWAAPQHRSIVAATTNEHQVAVALSSGEIVYFEMDGDGSLAEYDEKKE
MFGTVTCLSLGEVPEGRLRSSFLAVGCDDSTVRVLSLDPESTLESKSVQALTAPPSSLAI
IAMDDSSSGGSTMYLHIGLHSGVYLRTVLDEITGELTDTRQKFLGPKPVRLFQVTVQGRT
CVIGLSSRPWLGYSDPITRGFLVTPLNYVDLEWVWNFSSEQCEEGVVGIQGQSLRIFAIE
NLGDTITQKSIPLSYTPRRLLKHPEHPMFYTIEADNNTLPPDLRAKLIAEPGVVNGDARI
LPPDEFGYPKGKGRWASCISVIDPLSEEQRVLQTVDLDNNEAAVSAAIVSFASQDNESFL
IVGTGKDMVVNPRQFSEGYIHVYRFSEDGHELEFIHKTKVEEPPSALLGFQGRLLAGIGQ
TLRIYDLGLRQMLRKAQADVAPQLIVSLSTQGSRIIVGDVQHGITYVVYKPTTNKLIPFV
DDTISRWVTCTTMVDYESVVGGDKFGNIFLVRCPEKASHEADEESGGLHLLNTRDYLHGT
PHRLSLLGHSYTQDVPTSITKTSLVVGGQDVLLWSGINGTIGVFIPFVTREDVDFFQNLE
QHMRTEDAPLAGRDHLMYRSYYVPVKGVIDGDLCERYTLLPSEKKQMIAGELDRSVREIE
RKISDIRTRSAF
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacctcgaacatgttcctgtactcgctgacccttcagccgcctaccaacgtc
acccaggcggtgttgggtcagttctcaggaacgaaggagcaaaacattgtgacggcgtcg
ggatcacggttgacactgctccgcccagacccgtcgcaaggcaaggtaatcaccgtgctc
tcacacgacattttcggcatcatccgatccatggccgcgttccggctggctgggagcaac
aaggactacctcattctcgcgactgactctggaaggatcaccatcatcgagtacattccc
gcgcagaatcggttccagcgtcttcatttagagacgtttggaaagtctggagtgcgacgt
gtcatccccggggaatatctagcttgcgatcctaagggcagagcgtgtttgattgcctcg
gtcgagaagaacaaacttgtctacgttctcaatcgcaactcacaggccgagctcacaatc
tcatcgcctctggaagcacacaagcccggcgttttggtgctgtccatggtcgctctggat
gtcggctacgcgaacccggtctttgccgcgctcgaaatcgagtacacagaagcagaccaa
gatcccacaggggaggcggctcgagaagcggagactcagcttgtgtactacgagttggac
cttggactgaaccacgtcgtccggaaatggtccgaatccgtcgaccctacggcgtcgatg
ctcttccaggtgccaggtggtcaagacggtcctagtggcgtcttggtctgcggagaggaa
aacatcacatacaggcattcgaaccaagaagccttccgcgtaccaatcccacgtagacgt
ggtgcaacggaagacccttcgagaaaacgtcacgctgtctccggtgtgatgcacaagctc
aaaggcagtgccggcgcctttttcttcctcctgcagaccgaagacggtgatctcttcaag
gccaccctcgacatggttgaggacgccgacggaaatcccaccggcgaagtcaagaggctc
aagataaagtacttcgataccattccggtctcatcgagcttgtgcattctcaagagtggt
ttcctgtatgctgctagtcagttcggcaaccatcagttctaccagttcgagaagcttggg
gacgacgatgacgagctggagttctcgagcgatgacttccctacggatcccaaggctgga
tatgatgctgtttactttcacccgagacccttggagaaccttgccctcgttgagagcatt
gactccatgaaccctctgctcgactgcaaggttgcaaaccttaccggcgaggacgcacct
caaatctacacagcctgcggcaacggtgctcgcagcacgttcaggatgttgaagcatggc
ttggaagtcaatgagattgtcgcttcagagctacccggtatcccctcagccgtgtggacg
ctgaagttgaaccgcggcgaccagtacgacgcctacattgtcctgtctttcacaaacgga
acgctcgtcctgagcattggcgagactgtcgaggaagtcagtgactccggcttcctgacg
tctgtgcctactctggcggcacagctgctcggtgaagatggcctcattcaggttcatccc
aagggcattcgtcacattcgacacggccatgtcaacgagtgggcagcgccacagcatcgg
tccatcgtcgctgctacgacaaatgagcaccaggttgctgtcgccctcagctcgggtgag
atcgtctacttcgaaatggacggcgatggatctttagctgagtatgacgagaaaaaagag
atgttcggaaccgttacctgtctgagcttgggcgaagttccggaaggacgcctgcgaagc
tcttttttggccgttggttgcgatgacagcaccgtgcgcgtgctgtcgctggaccctgag
tcgacgctcgagagcaagtcagtgcaagctttgactgctcctccgtcgtccttggcaatc
attgccatggacgactcctcgtctggcggatcaactatgtatcttcatatcggcctccac
tctggtgtctaccttcgtacagtgttggacgaaatcaccggagaactgacggacacgaga
caaaagttcctcggtcccaagccggtgcggttgttccaagttactgtccaaggaaggact
tgtgttatagggttgagctcacgtccgtggcttggatactccgaccccatcacccgaggc
ttcttggttacgcccttgaactacgttgaccttgagtgggtctggaacttcagcagtgag
cagtgcgaagaaggtgttgttggcatccaaggccaatcgttgaggatttttgcaattgag
aacctcggagatactattacacaaaagtcgataccccttagctacactccgagacgtctt
ctcaagcaccccgaacaccccatgttctacactatcgaggcagacaacaacacgctaccg
cctgatcttcgtgccaagctcatcgcagagcccggtgtcgtcaatggcgacgcccggatc
ctcccacctgatgagtttggataccccaagggcaagggccgatgggcttcatgtatcagt
gtcatcgatccgttgtctgaggagcaacgggttttgcaaaccgttgacctcgacaacaac
gaagcagccgtcagtgctgcgatagtgtcttttgctagccaggacaatgaaagtttcctg
attgtcggcacaggcaaagacatggttgtcaatccccgccagttctccgagggttacatc
cacgtctaccgtttcagcgaagatggccacgagctggaattcattcacaagaccaaggtc
gaggagcctccatctgcacttctgggtttccaaggaaggctgcttgccggtatcggccag
accctgaggatatacgacctgggcctgaggcagatgctcagaaaggcccaagccgacgtg
gcaccgcagctgattgtgtcgctgagcacacaaggaagtcgtattattgttggcgacgtt
cagcacggaatcacctacgttgtttacaagcccaccaccaacaagcttattcccttcgtc
gacgataccatctccagatgggtcacgtgcacgaccatggtggactacgaatcggttgtt
ggaggcgacaagtttggcaacatatttctcgtccgctgtccggagaaggcgagccacgaa
gccgatgaagagtcgggcggtctgcaccttcttaacacgagggactacctccatggcacc
ccccaccgccttagcctcctcggccattcatacacccaggacgtgccgaccagcattaca
aagacgagtctggtcgtcggtggccaggatgtacttctctggagcggcatcaacggcacc
atcggtgtcttcatcccctttgtcacgcgcgaggatgtcgactttttccagaacctcgag
cagcacatgcgcaccgaggacgcaccgctcgccggcagggatcacctcatgtaccgcagc
tactacgtccccgttaagggcgtcatcgacggtgacctgtgcgagaggtacactctcctg
cccagtgaaaagaagcagatgatcgctggtgagctggaccgctcggtgcgggagattgag
aggaagatctcagacatccgtactcggtccgccttttaa
DBGET
integrated database retrieval system
