Colletotrichum destructivum: 87939280
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Entry
87939280 CDS
T10409
Symbol
CDEST_02777
Name
(RefSeq) Putative S1 domain, RNA polymerase Rpb7-like, nucleic acid-binding protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
cdet Colletotrichum destructivum
Pathway
cdet03020
RNA polymerase
cdet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
87939280 (CDEST_02777)
09124 Replication and repair
03420 Nucleotide excision repair
87939280 (CDEST_02777)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87939280 (CDEST_02777)
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87939280 (CDEST_02777)
03400 DNA repair and recombination proteins [BR:
cdet03400
]
87939280 (CDEST_02777)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
87939280 (CDEST_02777)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87939280 (CDEST_02777)
DNA repair and recombination proteins [BR:
cdet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
87939280 (CDEST_02777)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
DUF7932
Motif
Other DBs
NCBI-GeneID:
87939280
NCBI-ProteinID:
XP_062774987
UniProt:
A0AAX4I307
LinkDB
All DBs
Position
2:join(1877619..1877867,1877926..1878006,1878079..1878248,1878308..1878323)
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AA seq
171 aa
AA seq
DB search
MFFLYNMERRVTLHPSYFGRNMHELVTSKLLKDVEGTCAGSYYIISIMDTFDISEGRILP
GSGLAEFTVGYRAVVWRPFKGETVDAVVYSVNHQGFFAQAGPLRLFVSAHLIPSEIKWDP
NATPPQFTNNEDTIIEPGTHVRVKVIGTRTEVGEMWAIGSIKEDYLGCLQD
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttttttctctacaacatggagcgcagggtcaccttgcatccctcctactttggtcgg
aacatgcacgagctggtgacgagcaagctgttgaaggacgtggagggcacctgcgcggga
agctactacatcatttccatcatggataccttcgatatctctgagggtcgcattcttcct
ggaagcggtttggccgagtttaccgtcggctaccgagccgttgtgtggcggcctttcaag
ggcgagacggttgatgctgtggtctactcagtcaaccatcagggattttttgcccaggcg
ggacctctgcggttattcgtgtcggctcatctgatcccgtctgagatcaagtgggatccc
aacgcgacgccaccacagtttaccaataacgaggataccatcatcgagccgggaacacac
gtacgcgttaaggtgattggcacgcgtacggaagtcggcgagatgtgggcgatcgggagc
atcaaggaagactatctgggctgcctccaggattaa
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