Colletotrichum destructivum: 87940725
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Entry
87940725 CDS
T10409
Symbol
CDEST_04222
Name
(RefSeq) Putative ATP-dependent RNA helicase DEAD-box, Helicase superfamily 1/2, ATP-binding protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03013
Nucleocytoplasmic transport
cdet03015
mRNA surveillance pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87940725 (CDEST_04222)
09122 Translation
03013 Nucleocytoplasmic transport
87940725 (CDEST_04222)
03015 mRNA surveillance pathway
87940725 (CDEST_04222)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87940725 (CDEST_04222)
03041 Spliceosome [BR:
cdet03041
]
87940725 (CDEST_04222)
03009 Ribosome biogenesis [BR:
cdet03009
]
87940725 (CDEST_04222)
03012 Translation factors [BR:
cdet03012
]
87940725 (CDEST_04222)
Enzymes [BR:
cdet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
87940725 (CDEST_04222)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
87940725 (CDEST_04222)
mRNA cycle factors
Stress granule specific factors
87940725 (CDEST_04222)
Spliceosome [BR:
cdet03041
]
Complex C
Other components
EJC/TREX
87940725 (CDEST_04222)
Ribosome biogenesis [BR:
cdet03009
]
Eukaryotic type
90S particles
Helicases
87940725 (CDEST_04222)
Translation factors [BR:
cdet03012
]
Eukaryotic type
Initiation factors
eIF-4
87940725 (CDEST_04222)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
TniB
COG4_N
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
87940725
NCBI-ProteinID:
XP_062776432
UniProt:
A0AAX4I8B1
LinkDB
All DBs
Position
3:complement(join(521787..521845,521902..522942,523032..523137))
Genome browser
AA seq
401 aa
AA seq
DB search
MAEGSGIDRKAEERMEFSTSKEVTVHPTFESMSLKENLLRGIYAYGYESPSAVQSRAIVQ
VCKGRDTIAQAQSGTGKTATFSISMLQVIDTAVRETQALVLSPTRELATQIQSVVMALGD
YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADE
LLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGL
KQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDM
PQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF
GRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLIS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggcagcggaatcgaccgtaaggctgaggagaggatggagttttccacctcc
aaagaagtgacggttcacccgaccttcgagtcgatgtctctcaaggaaaatctcttgcgc
ggcatctacgcttatggctacgaatccccttcggccgtccagtcccgcgccatcgtccag
gtctgcaagggccgcgacaccattgcccaggcccagtccggtacgggtaagacggcgacc
ttctcgatcagcatgctccaggttatcgacacggcggtgcgcgagacccaggctctcgtc
ctctccccgacccgcgaactcgcgacccagatccagtccgtcgtcatggccctcggcgac
tacatgaacgtccaatgccacgcctgcattggaggcaccaacgttggcgaggacatccgc
aagcttgactacggccagcacatcgtctcgggaaccccgggacgcgtcgccgacatgatc
cgccgccgtcacttgcgcacgcgtcacatcaagatgctcgtcctcgacgaggccgacgag
ctcctcaaccgcggattccgtgagcagatctacgacgtttaccgatacctgccgcccgcg
acgcaggtcgtcgtcgtcagcgccacgctgccgtacgacgtgctcgatatgaccaccaag
ttcatgacggatcctgtgcgcatcctcgtcaagcgtgacgaactgacgctcgagggactc
aagcaatacttcatcgccgtcgagaaggaggactggaagttcgataccctgtgcgatctc
tacgacaccctgaccatcacgcaggccgtcatcttctgcaacacgcggaggaaggtcgac
tggctgacggacaagatgcgcgaggccaacttcaccgtcagcagcatgcacggcgacatg
ccgcagaaggagcgtgacagcattatgcaggatttccgccagggcaacagccgtgtgctc
atctcgaccgatgtgtgggcgcgcggtatcgatgtgcagcaggtcagtctggtcatcaac
tacgacctgccgagcaaccgtgaaaactatatccaccgtatcggccgaagcggtcgcttt
ggacgcaagggtgtcgccatcaacttcgttaccagcgaggatgttcgtatcctgcgcgac
attgagttgtactactcgacccagatcgatgagatgcccatgaacgtggccgatctcatc
tcttaa
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