Colletotrichum destructivum: 87942927
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Entry
87942927 CDS
T10409
Symbol
CDEST_06424
Name
(RefSeq) Putative CID domain, protein PCF11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cdet Colletotrichum destructivum
Pathway
cdet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87942927 (CDEST_06424)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87942927 (CDEST_06424)
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87942927 (CDEST_06424)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87942927 (CDEST_06424)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
87942927 (CDEST_06424)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
zf_PCFS4
VHS
Motif
Other DBs
NCBI-GeneID:
87942927
NCBI-ProteinID:
XP_062778634
UniProt:
A0AAX4IDQ4
LinkDB
All DBs
Position
4:complement(join(1679240..1679320,1679376..1679714,1679769..1679964,1680016..1680851,1680937..1681410,1681530..1681697))
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AA seq
697 aa
AA seq
DB search
MSYESSAAEVAEDYRQALEDLTTNVRFEISNLTMIAREQTEHAQVISEVLQDHILKAPAH
KKLPALYVLDSIVKNVGTPYTLFFGAKLYTTFMEAYAAVDGQVRRKMDEMLRTWKEPVPG
SLDKRPVFTPEVTQPIENALLKARTSALQAQQGRGGGRGRPPVAPYRETPTPPGMRPGSS
QPMPYSQPPPIPQANGTRPPSAPIPHHQQMAPYAPPPPSYSAQPSAAPGPYQPPPQMPYV
AGLSGPPHAAGISKDSLGQDIQKLIDASKLEFAQNPHDHSIQQRLKALLDVQSLLQHQNL
PQDQLVLIKNQVADLAVKVRPFSAQSSTPVATPVPSHPPPAPAAPVISSGPPQQQAAVTL
DALLGQGALAALLRQSAAPQTATPPPPPANIAIRSPPPQKVEPHRQPSATPSADPMALLA
GLRQAGLLPGPAPNATPKPAPPGPVPPLGMPMLPPGLLPPNLASLLASGQLPPRPPLGGM
NGNQLDATALKQQFQPHLIPSVFEQLGPQCTQCGRRFKTDEEGRKKKMAHMDWHFKAHQR
LAEAEKRGQHRSWYVDNNDWLKSREAIDVDHVQSADNSSSSPGRAKKEAKPRYIPVPDAS
SGINSVCPICQEKFENKWLDTAQEWVWLDTTLVGNRAYHYSCHSEATQARESTPVYSRGT
PEPVLGKRKAEGDLKSLRGRAKKDKDAAKWPKTELDY
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacgaatcatccgctgccgaggtcgcggaggactaccgtcaagctcttgaagat
ttgactaccaacgtgcgattcgaaattagcaatctgacaatgattgcgagagagcagacc
gagcatgcccaggtcatctccgaagttttacaggaccacatcttgaaggctccagcacac
aagaaactgccggccctctatgttctcgattcgatcgtcaaaaatgtcggcactccgtac
acgctcttctttggagccaaactatacacaacgttcatggaggcctacgcagccgttgac
ggccaggttcgccgtaagatggacgaaatgcttcgcacatggaaggaaccagttcccggg
tctcttgataagcggccagtcttcacccctgaagtcacgcagccgatcgagaacgctcta
ctgaaggctcgcacatctgctctccaagcccagcaaggacgaggaggtggccgcggacga
cctcctgttgccccctatcgcgaaaccccgacgccgccaggcatgcgacccggatcgagc
caaccgatgccatacagccagcccccgcctataccccaagcgaatggcacccggcctccc
agcgcgccgattcctcaccaccaacagatggcgccctatgcgcctcctccaccttcatat
agtgctcagccctcagcggctcctggcccttaccagccccctccgcaaatgccatacgtg
gctggactctcgggtccgcctcatgctgctgggatcagcaaagactctctgggccaagat
atccagaagttgattgatgcgtcgaagttggagtttgcgcagaacccacatgatcatagt
attcaacaaagactcaaggcgttgttggatgtgcagagcttgcttcaacaccagaacttg
ccccaggaccagttggtcctgattaagaatcaagtagccgatcttgctgtaaaagtgagg
ccgttttcggcccagagctcaacccctgttgctacacccgtcccctctcatccaccgccg
gctcctgcggcgcccgtaatttcgtctgggccaccgcagcagcaagctgcagtgacgctt
gatgcgctcttgggccaaggagctcttgctgcattactgagacagtcagctgcaccgcag
actgctactccaccacctcccccggccaacatagcgattcgatcccctccaccgcagaag
gtcgaaccgcaccgacagcccagtgcgacgccttcagcggatcccatggctttactggcc
ggcttacgacaagcgggactgcttcccggaccagctccgaatgctacaccaaagccagca
cctccgggaccggtaccacctctcggaatgcccatgctgccccccggcctgttgcccccc
aatcttgcaagcttgctggcatcgggtcaactgccgccgcgtcctcctctcggtggcatg
aatggcaaccagcttgatgccacagccctcaagcagcagttccagccacatctgataccc
tctgtgttcgaacagctgggtcctcagtgtactcagtgcggtaggcggttcaagacggac
gaggagggaaggaagaagaagatggcacacatggattggcatttcaaagcccatcaacgg
cttgcggaagcagaaaaaaggggccagcaccgcagctggtacgtcgacaataatgactgg
ctcaagtcacgagaagctatcgacgtcgatcacgtccaatcagcggacaactcatcgtcc
agccccggccgggcgaagaaggaagccaagcctcggtatatcccagtaccggatgcctcg
agcggcatcaacagcgtgtgtcctatctgccaggagaagtttgagaacaagtggttagat
actgctcaagagtgggtgtggttggataccacactggtcggcaaccgagcatatcactac
agctgtcactcggaagcgacacaggccagggaaagcacgccggtatactcgagaggaacg
cccgagccggtgctgggcaagcgtaaagcggaaggtgacttgaagtcgctacgaggtagg
gccaagaaagacaaagacgcagccaaatggcccaagacggaactcgactactag
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