Colletotrichum destructivum: 87943286
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Entry
87943286 CDS
T10409
Symbol
CDEST_06783
Name
(RefSeq) Putative RNA recognition motif domain, nucleotide-binding alpha-beta plait domain superfamily
KO
K12881
THO complex subunit 4
Organism
cdet Colletotrichum destructivum
Pathway
cdet03013
Nucleocytoplasmic transport
cdet03015
mRNA surveillance pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87943286 (CDEST_06783)
09122 Translation
03013 Nucleocytoplasmic transport
87943286 (CDEST_06783)
03015 mRNA surveillance pathway
87943286 (CDEST_06783)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87943286 (CDEST_06783)
03041 Spliceosome [BR:
cdet03041
]
87943286 (CDEST_06783)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
87943286 (CDEST_06783)
TREX complex
87943286 (CDEST_06783)
Spliceosome [BR:
cdet03041
]
Complex C
Other components
EJC/TREX
87943286 (CDEST_06783)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
87943286 (CDEST_06783)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
87943286
NCBI-ProteinID:
XP_062778993
UniProt:
A0AAX4IEI9
LinkDB
All DBs
Position
4:complement(join(2862913..2863189,2863244..2863320,2863370..2863534,2864345..2864374,2864428..2864661))
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AA seq
260 aa
AA seq
DB search
MSGKLDQSLDEILSTQRRSAGGPGRRSQRRSTGGRPAAAAPVGGVQKTSKPARAAANKPN
AAKPAPGTGDSKVIVSNLPKDVNEQQIKEYFITSVGPIKRVEISYGPNSVSRGIANITFR
EPDGASKAFQKLNGLLVDNRPIKIEIVVGASQAANVIPPTKKSLAERTTQPKAQPKSAAN
DKRNNANANKGAAAAPGARGKKPQRRVRTTRPTKKTAEELDSEMADYFESSANPAGENAA
APAAAPAATGGDAPMEDEIM
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcaagctcgaccagtctcttgacgagattctctcgactcagcgccgctctgcc
ggcggacccggtcgccgctcccagcgacgatccactggtggtcgtcccgcagccgcagcc
ccggttggcggtgttcagaagacatcgaagcctgcgcgtgcggccgcaaacaagcccaac
gctgccaagcccgcgccaggcactggtgacagcaaggtcatcgtgagcaacttgcccaag
gatgtcaacgagcaacagatcaaggagtacttcatcacatcagttggacctatcaaaaga
gtggaaatctcctacggacccaactctgtcagtcgcggcattgccaacattaccttccgc
gagcctgatggcgctagcaaggcctttcagaagctgaacggtcttctcgtcgataaccgc
cccatcaaaatcgagattgtcgttggtgcttcccaagcagctaacgtcatcccccccact
aagaagtcgcttgccgagcgcactactcagcctaaagcccagcccaagtctgcggccaac
gacaagcgcaacaacgccaatgccaacaagggtgccgctgctgctcccggcgctcgtggc
aagaagccccagcgccgcgtacgcaccactcgccctacgaagaagaccgcagaggagttg
gactcggagatggctgactacttcgagtcgagcgccaaccccgctggcgagaatgctgcc
gcccctgctgcggctcctgccgccactggcggtgatgcccctatggaggacgagattatg
taa
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integrated database retrieval system
