Colletotrichum destructivum: 87943781
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Entry
87943781 CDS
T10409
Symbol
CDEST_07278
Name
(RefSeq) Putative helicase, rRNA-processing arch domain, P-loop containing nucleoside triphosphate hydrolase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87943781 (CDEST_07278)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87943781 (CDEST_07278)
03041 Spliceosome [BR:
cdet03041
]
87943781 (CDEST_07278)
03009 Ribosome biogenesis [BR:
cdet03009
]
87943781 (CDEST_07278)
03016 Transfer RNA biogenesis [BR:
cdet03016
]
87943781 (CDEST_07278)
Enzymes [BR:
cdet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
87943781 (CDEST_07278)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
87943781 (CDEST_07278)
Spliceosome [BR:
cdet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
87943781 (CDEST_07278)
Complex C
U4/U6.U5 tri-SnRNP related factors
87943781 (CDEST_07278)
Ribosome biogenesis [BR:
cdet03009
]
Eukaryotic type
Pre-60S particles
Helicases
87943781 (CDEST_07278)
Transfer RNA biogenesis [BR:
cdet03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
87943781 (CDEST_07278)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
ATPase_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
87943781
NCBI-ProteinID:
XP_062779488
UniProt:
A0AAX4IFY9
LinkDB
All DBs
Position
4:join(4394442..4397593,4397651..4397831)
Genome browser
AA seq
1110 aa
AA seq
DB search
MDELFDVFDAQPGPEQTESHSEHEATVAEPPKKSRKKDKKSNKRKADGAIKNGVVAEQDD
AEMPDADDVAKDDPAGNQPEDAGATSDDQEDSHKRRKKENEAQPVLTDTFQTAQSREVAG
ATTFTQAQDESLVLSHNIQHQVALPPDLDYEYVPLSEHKPPAEPARKYNFKLDPFQSLSV
ASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEALFGD
VGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEE
TIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFPAGGSGI
FLVVDEKGVFREGNFQKTMALIEAGKGQDPSNASASWKGKGAKKQTQKGGAAADMKADIS
KIVRMIMQKSFHPTIIFNFSKKEVENLALQISHFQFNNDSEQAMVKTVFNNAIQSLSEAD
RELPQIQNLLPLLQKGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKT
VVFTQVTKWDGTQRRPLTPSEYIQMSGRAGRRGLDSRGIVIMMIDDKMEPDTARAIVVGE
QDRLNSAFYLGYNMILNLLRIEAISPEFMLERCFHQFQTGASVPALERDLMSLQQERDNM
SIADEATVKDYYNLRNQLEQYTSDMRAVIQHPEHCGDFMQPGRLVRIHDPKKTNNTVGGT
DFGWGVVADLIRRQRKSNEPEIPPQESCIIDVMMVVDQNSAPVAEGAKLASGDLPSGLVP
YPKPEQPDNGARFEIVPCLLTCVKAISQIRVFMPKDCRSQAALQEVGNSLREVHRRFPDG
LPILDPVENMGINDDAFRSLMKKIEMLEARLLTNPLHGSPLLPQLYLQYRAKEKLTEQIK
AKKREIARLHSIAQMDELKARKRVLRRLGFLNESEVVELKARVACEISSTEGHELVLAEL
LFDRFFNELSPELIAATLSCFVLDEKLETAALREELAKPYREVQAKAKQVAKVSRESKLE
LNEEEYLAGFKWQLMETVYAWAQGKPFAEICKMTNAYEGSLIRLFRRLEELLRQMGQGAK
VMGSDELTQKFEDSLAKIRRDIVAAQSLYL
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atggacgagctcttcgacgtcttcgacgctcagccgggcccggagcagaccgagtcgcat
agcgagcacgaagccaccgtcgctgaacctcccaagaagtcgcgcaagaaggacaagaag
agcaacaagcgcaaggctgatggtgcaatcaagaatggcgttgtcgctgagcaagacgat
gccgagatgcccgacgccgacgacgtcgccaaggacgaccctgccggaaaccaacctgag
gacgccggtgcaacctctgacgaccaggaagacagtcacaagcgcaggaagaaggagaac
gaggcccagcccgttctgaccgacaccttccagactgcccagtcgagagaggtcgccggc
gccacaaccttcacccaggctcaagacgagtcgcttgtcctgtcccacaacattcagcac
caggttgccttacctcctgatctggactacgaatacgtcccgctctctgagcacaagccg
ccggcggaacccgcccgcaagtacaacttcaagctggacccgttccagagtctgtccgtc
gcttcgatcgagagagaagagagtgttctggtctctgcccacacatccgccggaaagacc
gttgtcgccgagtacgccattgcccaatgcctgaagcgcaaccagagagtcatctacacg
agtcctatcaaggcactttccaaccaaaaataccgagacttcgaggcccttttcggcgac
gtcggcctcatgacgggtgatgtcaccatcaaccctaccgctagttgcttggtcatgacc
accgagattctccgctccatgttgtaccgcggttccgagatcatgcgcgaggttgcctgg
gtcgtctttgacgagattcactacatgcgcgacaagaccagaggcgtggtgtgggaggag
accatcatcctgcttcccgataaggttcgctacgtgttcctgtctgccaccattccgaac
gcctttcagttcgccgaatggattgccaagattcatcaccaggcctgtcatgttgtctat
accgacttccgacccacccctctccagaactacttcttccctgccggcggcagtggtatc
tttctggtggtggacgagaagggcgtgttccgagaaggcaactttcagaagaccatggct
ctgatcgaggcgggcaagggacaagaccccagcaacgccagcgccagctggaagggcaag
ggggccaagaagcagacccaaaagggcggagcggcggccgacatgaaggccgacatctcc
aagattgtccgcatgatcatgcagaagagctttcaccccaccatcatcttcaacttcagc
aaaaaggaggttgagaacctggctctgcagatctcccacttccagttcaacaacgactcg
gagcaggccatggttaagactgtcttcaacaacgccatccagagcttgtccgaagccgac
cgcgagctgccccagatccagaacctgcttcctctcttgcagaagggaatcggtgtgcat
cactctggtcttcttcctattctgaaagagaccatcgagatcctcttccaggagtctctc
atcaaggttctcgttgcgacggaaactttctccatcggtctcaacatgcctgccaagacc
gtcgtcttcacccaggtgaccaagtgggatggtacccagcgcagacctctcacgccgtcc
gagtacattcagatgtctggacgtgccggtcgtagaggcctggattcccgtggtattgtc
atcatgatgatcgacgacaagatggagcccgatactgcgcgcgccattgttgtcggcgag
caagaccgtctcaattccgccttctaccttggctacaacatgattttgaacctgctgaga
atcgaggccatttctcctgaattcatgcttgagcgttgcttccaccagttccagactggc
gctagcgttccggcgcttgagcgagatctcatgtctcttcagcaagagagggacaacatg
tcgattgccgacgaggccaccgtcaaggactactacaacctgcgcaaccagctggagcag
tacaccagcgacatgcgcgctgttatccagcaccccgagcactgcggagacttcatgcag
cctggtcgcctggttcgtatccacgaccctaagaagaccaacaacaccgttggaggcacc
gactttggctggggcgttgttgcagacctgattcgtcgccaacgcaaatccaacgagccc
gaaatccctcctcaagagtcatgcatcattgatgtcatgatggttgttgaccagaatagc
gctccggtcgccgagggtgccaaactagcctctggtgaccttccttcgggcctggttcct
taccccaagcccgaacaacccgacaacggtgctcgcttcgagattgtcccgtgcctattg
acttgcgtcaaggccatcagccaaatcagagtcttcatgccgaaggactgtaggtcacag
gcggctctccaagaagttggcaattctctccgagaggttcacagacgatttcccgacgga
ctccccattttggatcccgtcgagaacatgggtatcaacgacgatgccttcaggagcctg
atgaagaagattgagatgttggaagcgcgcctgctcaccaacccccttcatggatcacct
ttgctgccccagctctacctccagtaccgcgccaaggagaagttgaccgagcagatcaag
gccaagaagagagagattgcgagacttcacagcattgcccagatggacgagctcaaggct
cgcaagcgtgtcctgcgccgtcttggctttctcaacgagtccgaggttgtcgagcttaag
gcccgtgttgcctgcgaaatttcgtccaccgagggccacgagctggtccttgccgagctc
ctgttcgaccgtttcttcaacgagctgtcccctgagctgattgctgctacgctcagttgc
ttcgtcttggacgagaagctcgagaccgccgccctgcgcgaggagctggccaagccctac
cgcgaggtccaggccaaggcaaagcaggtcgccaaggtcagccgcgagagcaagcttgag
cttaacgaggaggagtacctggccggtttcaagtggcaactgatggagaccgtctacgcc
tgggcacagggcaagccgtttgcagagatctgcaaaatgaccaacgcctacgaaggctcc
cttattcgtctcttccgccgtcttgaagagctcctgcgccagatgggtcagggtgccaag
gtcatgggcagcgacgaactgactcagaagttcgaagacagtctcgccaagatccgccgc
gacatcgtcgcggcccagagtctgtacctctga
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