Colletotrichum destructivum: 87944568
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Entry
87944568 CDS
T10409
Symbol
CDEST_08065
Name
(RefSeq) Putative helicase, P-loop containing nucleoside triphosphate hydrolase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03013
Nucleocytoplasmic transport
cdet03015
mRNA surveillance pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87944568 (CDEST_08065)
09122 Translation
03013 Nucleocytoplasmic transport
87944568 (CDEST_08065)
03015 mRNA surveillance pathway
87944568 (CDEST_08065)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87944568 (CDEST_08065)
03041 Spliceosome [BR:
cdet03041
]
87944568 (CDEST_08065)
Enzymes [BR:
cdet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
87944568 (CDEST_08065)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
87944568 (CDEST_08065)
Spliceosome [BR:
cdet03041
]
Complex C
Other components
EJC/TREX
87944568 (CDEST_08065)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
87944568 (CDEST_08065)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
87944568
NCBI-ProteinID:
XP_062780275
UniProt:
A0AAX4IJF5
LinkDB
All DBs
Position
5:join(1560676..1560898,1561458..1561868,1561919..1562537,1562592..1562640)
Genome browser
AA seq
433 aa
AA seq
DB search
MSAEEDLIDYSDEELQTNETAAASNGKKADAAAGNNVDKKGSYVGIHSTGFRDFLLKPEL
LRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSV
LVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHIIVGTPG
RLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSDE
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFV
KSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIE
RINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKAIEKRFEVALPEF
PKEGIDASTYMAS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaggaggatctcatcgactactccgacgaggagcttcagaccaacgagacg
gccgccgcctccaacggaaagaaggctgacgccgccgctggcaacaatgtcgacaagaag
ggcagctatgtcggcatccactcgaccggtttccgcgacttcctcttgaagcccgagctt
ctccgcgctattggcgattgcggtttcgagcatccttcggaggtccaacaaacctgcatt
ccccaggctctcctcggtggagatattatctgtcaggccaagtctggtctcggaaagacg
gccgtctttgtcttgacgaccctccagcaagttgagcctgtccagggcgaggtctccgtg
ttggttatgtgccacactcgtgagctcgctttccagattcgcaacgagtacaaccgcttc
agcaagtacatgcccgacatcaagaccggcgtgttctacggtggcactcccattcagaag
gacgttgagacgatcaagaacaaggagacctgccctcacatcatcgtgggcacccctggc
cgacttaacgcgttggttcgcgacaaggttctccgcctcggcagcgtccgcatcttcgtt
cttgacgagtgcgacaagatgctcgaccagatcgacatgcgccgtgacgtccaggagatc
ttccgcgccacccccacccagaagcaggtcatgatgttctcggccactctgtctgacgag
atcaagcctatctgccgaaagttcatgcagaaccctactgagcactacgttgacgaggac
accaagctcaccctgcatggtctgcagcaatactacatcaagctcgaggagcgcgagaag
aaccgcaagctcaacgagcttctggacgacctccagttcaaccaagtcatcatctttgtc
aagagcacgctgcgcgcgaccgagctggacaagttgctgagagagtgcaacttcccctcc
atcgccgtccactccggcgtcagccaggaggagcgtatccgccgttacaaggagttcaag
gagttcaacaagcgcatctgcgttgccaccgacgtctttggcagaggtatcgacattgag
cgcatcaacttggccatcaactacgatctgcccgccgatgccgactcctacctgcacaga
gtcggtcgtgctggccgtttcggtaccaagggtcttgccatctcctttgtgagcaccgac
caggaccaggaggttctcaaggccatcgagaagcgctttgaggttgctcttcctgagttc
cccaaggagggtatcgacgccagcacctacatggcctcttaa
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