Colletotrichum destructivum: 87944889
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Entry
87944889 CDS
T10409
Symbol
CDEST_08386
Name
(RefSeq) Putative helicase, rRNA-processing arch domain, P-loop containing nucleoside triphosphate hydrolase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87944889 (CDEST_08386)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87944889 (CDEST_08386)
Enzymes [BR:
cdet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
87944889 (CDEST_08386)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
87944889 (CDEST_08386)
mRNA degradation factors
3'-5' decay
Ski complex
87944889 (CDEST_08386)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
87944889
NCBI-ProteinID:
XP_062780596
UniProt:
A0AAX4IJG0
LinkDB
All DBs
Position
5:join(2754322..2754521,2754597..2757564,2757626..2758306)
Genome browser
AA seq
1282 aa
AA seq
DB search
MASDLAAAIRGLHLDNRLSPDIDDILFQQRPRKRVKQDASYVKAHLEADFLTPSTQFSSE
WLSRLQQRWDCPVDYTELFRISAPQTRTVTRFERHGLEGRVTGYKNVTVPANSATAKNST
SFLRKPASRADFVRGAAGFFPFAPGGLDGIEATAALEDQVHRAGGGESATASSSKLERVI
KLGDEGGLLEVAPGLSRGIDVNKRKTDDDEARAVEQELDREPEQAPGAEEAEAEAQTNGE
KETGAEAGSEDEEDGEDIDAILPVEFPALEPHGALAASSARKAGREWAHMVDINRDITNF
RELVPDMARDWPFELDTFQKEAIYHLESGDSVFVAAHTSAGKTVVAEYAIALASKHMTKA
IYTSPIKALSNQKFRDFRQTFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRD
VEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKQKDIY
VISTPKRPIPLEHYLWAGKNIHKIVDSDKKFIEKGWKEANQAIQGKDKMKVPEANNAPRG
GGGQRGAPRGGIQRGGQRGGQRGGGSQQRGRGGAPRASHNPGHMGRIGRQGGFTSAAQDK
NLWVHLVQFLKKDNLLPSCIFVFSKKRCEENADALSNQDFCTANEKSAIHMTIEKSIARL
KPEDRTLPQIIRLRELLSRGIAVHHGGLLPIVKEIVEILFAQTLVKVLFATETFAMGLNL
PTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGDEAPPVADL
QKMILGEPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKIS
EADLAKIKRDSCGICDVSMDECHQASEDYKQLTGDVYKSLIGIPIGRKMFSQARLIVYSR
DGIRTPGILLSDGASNKGPQGSPTLHVCEIRLMRETRDSTDLLPFIPTFRKYLTPLPQAK
KHLRIKTLHVPLSDVECLTRYVTKGIVPEIFQSGEKYIKAKDRLHSICRSWDDLWDEMDL
SKIKNLQFQEMMRKRKEAEVTASSSPALSCPQFLKHFAMCHDQWLIKEHISQLRHSLSDQ
NLQLLPDYEQRIQVLKQLQFIDESARIQLKGKVACEIHSGDELVLTELILDNVLADYEPA
EIAALLSAFVFQEKTDTQPNLTGNLERGKDTIIAISEKVNEVQTLHQVIQSADDSNDFIS
RPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAARIIGDPELY
QKMQTAQEMIKRDITAVASLYM
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgacttggctgctgccattcgaggtcttcatctggataatcgtctcagccct
gatatcgatgatatcttattccagcaacgacctcgcaaacgcgttaagcaggatgcatcc
tatgtcaaggctcatttggaggctgattttctgacgccctctactcaattctcgtccgag
tggctcagtcgactgcaacagcgctgggactgccccgtagattacacggagcttttcagg
atttctgctcctcaaactcgaactgtgacacggtttgaacgacatggccttgaaggcaga
gtgaccggctacaagaacgtcaccgtgccggccaacagtgctaccgccaagaactccacc
tcctttctgcgcaagcctgctagtagagctgacttcgtccgtggagctgccgggttcttc
cctttcgcacctggcggccttgatggcatcgaagcgacagcggcactcgaggaccaagtc
caccgggctggcggcggagagtctgcaactgcctcgtccagcaagcttgaacgagtcatc
aagctcggtgacgagggcggccttctcgaggttgcacctggtctcagccgcggcatagat
gtgaacaaaaggaagacagacgacgatgaggctagagccgtcgagcaggagctggaccgg
gaacccgagcaagcgcccggtgctgaagaagcagaggcggaggcgcagaccaacggagag
aaggagaccggggccgaagccggttctgaagacgaagaggacggcgaggacattgatgct
atcttgccggtcgagtttccggctctcgagccacacggagctttggcggcatccagtgcc
aggaaggctggccgggaatgggctcacatggtggatatcaaccgagacatcacaaacttc
agagagttggtacccgacatggcaagagattggcccttcgaactcgacacgttccaaaag
gaggccatttaccatctcgaaagtggcgattctgtcttcgttgctgcgcatacatcagcc
ggcaaaactgtcgtcgccgagtatgccattgcccttgcctccaagcacatgaccaaggca
atctacacgtcacccatcaaggccttgagcaaccagaagttccgagacttccgccaaaca
ttcgacgaagttggtattctgacgggcgacgttcaaatcaacccggaggctagttgcctg
atcatgacaacagaaattctgcgaagcatgctgtatcgaggagccgacctgatccgagac
gtagagtttgtcatcttcgacgaggtacactacgtcaatgattttgagcgcggtgtcgtc
tgggaagaggtcatcatcatgcttccagaacatgttacccttattctgttgtctgcgact
gtccccaacacttatgagtttgcctcatgggtcgggcggaccaaacagaaagacatttat
gtcatctctacacccaagcggcctattcctctggagcattacttatgggctgggaagaac
attcacaagattgttgactcggacaagaaattcattgagaagggctggaaggaggccaac
caagctatccagggtaaagacaaaatgaaggttccggaggcgaacaatgcgcctcgtggt
ggaggtggccaaagaggggcaccgaggggagggatacagcgtggcggacagcgcggaggc
caacgtggcggtggttcccaacagagaggccgcggcggagcgcctcgtgccagtcataac
cccggacacatgggtaggattggtcggcagggcgggtttacctccgctgctcaagacaag
aatctctgggttcaccttgtccagtttctcaagaaggacaatctgcttccctcatgcatc
ttcgtcttctccaagaagcgatgcgaggagaatgctgatgcgctcagcaaccaagacttc
tgcacagccaacgagaagagcgccattcacatgacgatcgagaaatctatcgccagactc
aagccagaggaccggaccctgcctcagattatcagattgagggagctcttgtccagaggc
atcgcggtccaccacggaggtctgctgcccatcgtcaaggaaattgtcgagattctgttc
gcccagactcttgtaaaggtgctcttcgctacagagacatttgccatgggtcttaacctg
ccgactcgaacagtcgttttctccggataccgcaagcatgacgggcactcttttaggaac
ctgctcccaggcgagtatacacagatggccggccgagccggtcgtcgtggcctggatacc
gtgggctcggttatcatagtgccgcccggtggagacgaggctcctcctgttgccgacctt
caaaaaatgatcttgggagagccgtcgaagctgaggtctcagttccgactcacctacaac
atgattctcaacctgcttcgggtggaagccctcaagattgaagagatgattaagcgcagc
ttttcagaacacgccacgcagcagctgctccctgagcatgaaaaggcagtcaaaatttcg
gaggccgatttagccaagatcaaacgagactcttgtggcatatgcgatgtctccatggat
gaatgccaccaagcgtcagaggactataaacaactcacaggcgacgtctacaagtctctc
atcggcattccgatcggccgcaaaatgttcagccaggcgcgcttgatcgtgtacagcaga
gacggcatccgtacgcctggtattttgctgtctgacggcgcgagcaacaagggtccccag
ggcagtccaacactgcatgtctgcgaaatcagactgatgagagagactcgcgactcaacg
gacctgttgccgttcattccaaccttccgcaagtatcttacgccactgccgcaggcaaag
aagcatctgcgtatcaagactctgcatgttcctctgagtgacgttgaatgtcttacaagg
tacgttaccaagggtatcgtgccagagatctttcagagcggcgaaaaatatatcaaggca
aaggacaggctccactcgatctgccggtcttgggatgacctctgggacgaaatggatctg
tccaagatcaagaatcttcaattccaggagatgatgaggaagcgaaaagaggcagaggtc
accgcatcgtcttcgccagctctctcatgccctcagttcttgaagcattttgccatgtgc
cacgaccagtggctcatcaaggaacacatctctcaactgcgacactctctttcggaccag
aatctccaactcttaccagactatgagcaacggatccaggtgctcaagcagctgcaattt
attgatgagagtgcaagaattcaactcaagggcaaggtggcctgtgagattcattcgggc
gacgagctcgtattgacggaactcatcctggacaatgtgctcgcagactatgagccggcc
gaaattgcggcccttctatcggcctttgtgttccaggaaaagacagatactcagccgaac
ttgacgggcaaccttgagcgaggcaaggacactattattgccatcagcgagaaggttaac
gaagtccagacgctccaccaggtcattcagtctgccgacgactccaacgatttcatctcc
cgaccccgatttggcttgatggaagttgtatatgagtgggcaagaggcatgagcttcaag
aacatcaccgatctgaccgatgtcttggagggcaccattgtacgaactataacgcgtctt
gatgagacgtgccgcgaagtgaagaatgctgcccgcatcatcggagatccggagctatac
cagaagatgcaaacggcacaggagatgatcaaacgggacatcacggcagttgccagtctg
tacatgtag
DBGET
integrated database retrieval system
