Colletotrichum destructivum: 87944901
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Entry
87944901 CDS
T10409
Symbol
CDEST_08398
Name
(RefSeq) Putative tetratricopeptide-like helical domain superfamily, pre-mRNA-splicing factor Syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cdet Colletotrichum destructivum
Pathway
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87944901 (CDEST_08398)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87944901 (CDEST_08398)
03041 Spliceosome [BR:
cdet03041
]
87944901 (CDEST_08398)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
87944901 (CDEST_08398)
Spliceosome [BR:
cdet03041
]
Complex B
Other components
Prp19-related factors
87944901 (CDEST_08398)
Complex C
87944901 (CDEST_08398)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_10
RPN7
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
87944901
NCBI-ProteinID:
XP_062780608
UniProt:
A0AAX4IJB9
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Position
5:complement(join(2840649..2842889,2842942..2843112,2843195..2843251))
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AA seq
822 aa
AA seq
DB search
MPASVLLNGSQRRPDLHLVGDEDSVYEQDVIRNPGSIKPWLAYIQFKSQHGTVHERAFVL
ERACLQLPRSYKLWKMYLTFRVQHVSKLNASVFSAEYRKVNALFERALILLNKMPRIWEL
YLKFLLQQPLVTTTRRTFDRALRALPLTQHNRIWALYKPFANSIAGISAVKVWRRYMQIH
PEDAEDFIELLTQAGFYTEAVKKYMDVLNNPRFASKQGKGHYELWSEMVDLMVEHAADIE
TGHETGIDVDRIVRSGIVRFADQRGKLWCGLATYWIRRGNFERARDVFEEAITTVMTVRD
FTLVFDSYTEFEESIIGALMEVASDRADKGIVDEEADFELDIRMMRFEQLMDRRPFLLND
VVLRQNPNNVSEWEKRVALWGDNKFEVVQTYTAAIATIQPKKAIGAFHQLWANYAKFYER
GGDVRNARVIMEKAVKVPFKSVAELADMWIEWAEMELRNENFDDAVRIMAKAVQAPKRST
VDYFDETLSPQQRVHKSWKLWSFYVDLVESVSSLEDTRKVYERIFELRIATPQTVVNYAN
LLEEHQYYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKIGIERLRDLFEQAIEDCP
PKFAKVIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLPST
RPIYEKAISTLPDNEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTSPDFWAKWE
AFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQRRPEESIDPEAADAMAAL
ERQAKAPVGFVAASDTAKTTNEAEAPPVTANPDAIDIDDLDE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcctccgtgcttctcaacggctctcagagacgtccagacctgcacctggtgggc
gacgaagactccgtttacgagcaagacgtcatccgcaaccccggaagcatcaagccatgg
ctcgcctacatccagttcaagtcgcaacatgggaccgtacacgagcgcgccttcgtgctc
gaacgcgcctgtcttcagctcccccgatcatataagctttggaagatgtatcttactttt
cgagtccaacacgtttcgaagctgaacgccagcgtcttttctgccgaataccgcaaggtt
aacgcccttttcgagcgcgcgctgatccttttgaacaagatgcctcggatctgggaactg
tatctgaaattcctacttcaacagcctcttgttacgaccacacggcgaactttcgatcgg
gctcttcgcgcactgcctctcacccagcacaaccgaatctgggccctctacaagcccttc
gctaattccattgcaggaatcagtgccgtcaaggtgtggcgccgctacatgcagattcac
cccgaggacgccgaagacttcatagaacttctcacccaggcgggcttctacacagaggcc
gtcaagaaatacatggatgtcctcaacaatccgcgattcgcaagcaagcagggaaagggg
cattacgagctgtggagcgaaatggtcgacctgatggttgaacatgcggcggacatcgag
actggtcatgagactggcatcgatgtagacaggatcgttagaagcggtattgtccgtttt
gccgatcaacgagggaagctatggtgtgggctggccacatattggatacggaggggcaac
tttgagcgcgctagggatgtatttgaagaagctatcacgacggtgatgaccgtccgagac
ttcactcttgtttttgactcatatactgagttcgaggagtctatcattggagctctgatg
gaggtcgcctctgatcgcgcggacaagggcattgtcgacgaggaggcggatttcgaactc
gacatcagaatgatgcggttcgagcaactcatggaccggagaccttttcttctcaacgac
gtcgtcctgcgccagaaccccaacaatgtgtcggaatgggagaagagggttgccctttgg
ggcgacaacaagtttgaggtggttcagacgtatacggccgccatcgcaacaatacagcca
aagaaggccataggggcattccaccagctctgggcaaactatgccaaattctacgagcgc
gggggcgacgtacggaacgcgcgcgtcatcatggagaaagctgtcaaggttccgttcaag
tccgttgcggaattggctgacatgtggattgaatgggccgagatggagctgaggaacgaa
aactttgatgatgccgttcggatcatggcaaaggcggtgcaagcgccgaagagatcgaca
gtcgactattttgacgagacgttgtcgccacagcagcgtgtgcacaagagctggaagctc
tggagcttctacgtggacctcgtcgagagtgtcagctctctggaggatactcggaaggtg
tacgagcgcattttcgaactgcggattgctacgccgcaaacagtggtcaactacgccaat
ctgttggaggagcaccagtactacgaggagtcgttcaaaatctacgaacgaggcctggat
ctcttcagctacccggtcgcctttgagctatggaatctgtacctcacaaaggccgtcgat
cgcaagattggcatcgaacgtctgcgcgacctttttgagcaggctatcgaggactgtccg
cccaaatttgccaaggttatctacctcatgtatggcaacttagaggaggagcggggtctt
gcaaggcacgctatgcgaatctacgaacgcgcgaccagggcggtggcggatgaggaccgg
gcggacatgttcaatttttacatcaccaagtcggcatccaactttgggctgccgtcgacg
agacccatctacgaaaaggccatatccaccttacccgacaatgaggcacgggacatgtgc
ctaaagtttgccgacatggagaagcgccttggcgagatcgatcgggcgcgggctatctac
ggtcacgcgtcacagttttgcgacccacgcaccagtccagacttttgggcgaaatgggag
gcgttcgaggtgcagcacggcaacgaggacacgtttaaggaaatgctgcggatcaagcgg
agcgtgcaggcacagtacaacaccgacgtcaacttcatcgcgtcgcaggccctcgcacgc
agccaacggcgaccagaggagtcgatcgatcccgaggcggccgatgccatggcagcgctc
gagcgacaggcgaaggcgcccgttgggttcgtggcggccagcgataccgccaagacaacc
aacgaagccgaggcaccacctgtaacggcaaatccggatgccatcgacatcgatgaccta
gacgagtaa
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