Colletotrichum destructivum: 87944906
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Entry
87944906 CDS
T10409
Symbol
CDEST_08403
Name
(RefSeq) Putative ribosomal protein uS5 domain 2-type superfamily
KO
K12587
exosome complex component MTR3
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87944906 (CDEST_08403)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87944906 (CDEST_08403)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
87944906 (CDEST_08403)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
87944906
NCBI-ProteinID:
XP_062780613
UniProt:
A0AAX4IJ50
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Position
5:join(2857645..2857762,2857813..2858570)
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AA seq
291 aa
AA seq
DB search
MTDRRRINGPPGATMPPVYDITNQTSASRARPGNTIRGLFLKTGVTPTASGSAYMEIEPP
YGHVSSKSKVNGMKLICTVHGPRSLPRSAPFSPYLVLSTHVKYAPFATRQRRSYLRDSSE
RDISVHLDTALRGVIIADRWPKSGVDVIVTIIEGDQEREASHFQGNEEWDMMNVLSGCVT
VAAAALADAGIDCVDMVTGGVAALVASDKGDTNTPSIVLDPISLEHESILAACCVAYLPN
RAEITNLWVKGQLPPSDSSLHTKLIGRAIQASKGNYRAVLERLQNNQPPNS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcggcggagaatcaacgggccgcccggcgcaacaatgccaccggtctacgac
atcaccaaccaaacctcggcatctcgggcaaggccaggaaataccattcggggcttgttc
ctcaagactggcgtgaccccgacggcatcaggttcagcctatatggaaatcgaaccgcct
tacggtcatgtgagctcaaagtccaaggtcaacggcatgaagctcatctgcaccgttcat
gggcctcgttcactcccacgatctgcaccattctcaccctatttggtgctctcaacccac
gtcaaatacgcccctttcgctacgcgtcaacgccgcagctatcttcgcgactcgagtgaa
agggacatcagcgtccaccttgacacggctcttcgtggagtcatcatcgctgaccgatgg
cccaagagtggcgttgatgttattgttaccatcatcgaaggtgatcaggagcgagaagcc
tctcattttcaaggcaacgaggaatgggatatgatgaacgttctcagtgggtgcgtcacc
gttgccgcagccgctctcgcagatgccggcattgattgtgtggacatggtcacaggcggt
gttgcagctcttgttgcttcagacaagggcgacaccaacacgccgtccattgtgctggat
ccaatctccctggaacacgagagtattctggccgcctgttgtgttgcctacttgcccaat
cgcgccgagattaccaacctctgggtaaaaggtcaacttccgccatccgactcttcgttg
catacaaaactcataggtcgtgccattcaagcttccaagggcaactaccgtgctgtcctt
gaaagactacaaaacaaccaaccacctaacagctag
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