Colletotrichum destructivum: 87945707
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Entry
87945707 CDS
T10409
Symbol
CDEST_09204
Name
(RefSeq) Putative ribosomal protein uS5 domain 2-type superfamily
KO
K11600
exosome complex component RRP41
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87945707 (CDEST_09204)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87945707 (CDEST_09204)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
87945707 (CDEST_09204)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
87945707 (CDEST_09204)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
DUF4438_C
Motif
Other DBs
NCBI-GeneID:
87945707
NCBI-ProteinID:
XP_062781414
UniProt:
A0AAX4IL57
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Position
6:complement(join(111389..111902,111977..112263))
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AA seq
266 aa
AA seq
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MPLDTSTYSMALLRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQ
RRGGAGGQSKEAAVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPH
SSISISLHVLSQDGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPL
LDLNTQEEQELPYMTVGTLGLADRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRV
VKEKGRQMVQEGVVERGTGLDLEMES
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgacacatcgacctactctatggcgctgctgcgcgtcgatggccgccgatgg
aacgagctccgacggctgcacgcccagatccggacacaagaagccgccgacggctctagc
tacctcgagatgggacataccaaagtcatgtgtgttgtgaccggtccgaccgagccccag
cgtcgcggaggtgcgggcggccagtccaaggaggctgccgtcaccgtcaacctcgtcgtc
gccggctttagctctgtcgaccgaaagaagcggggccgcaacgacaagcgaacacaggag
ctcgaggccaccattgccaaagccgtctcggcgaaccttcacacccacctcttcccccac
agcagcatttccatctctctacacgtgctgtcgcaagacggttcactgctggcggccctc
ctaaacgcctcgacacttgccctcatcgatgcgggtattcccatgaccgactacatcgct
gcgtgcacggcgggttcgacttcgacatatgcagccgccgacgacggcgcagatccgttg
ctggatctcaatactcaagaggagcaggaattgccgtacatgacggtcggaactctgggt
ttggcggaccgtgttgctgtcctggtgtgcgagagtcgcgtccaggtcagccgtctggag
ggcatgcttgcggttggtgtggatggatgtaaacaggtacgacagtttatggaccgcgtc
gtcaaggagaaaggtcggcagatggtgcaagagggtgtggtggaaagaggtactggcttg
gatctggagatggaatcatga
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