KEGG   Colletotrichum destructivum: 87946608
Entry
87946608          CDS       T10409                                 
Symbol
CDEST_10106
Name
(RefSeq) Putative WD40/YVTN repeat-like-containing domain superfamily, TREX component Tex1/THOC3
  KO
K12880  THO complex subunit 3
Organism
cdet  Colletotrichum destructivum
Pathway
cdet03013  Nucleocytoplasmic transport
cdet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cdet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    87946608 (CDEST_10106)
  09122 Translation
   03013 Nucleocytoplasmic transport
    87946608 (CDEST_10106)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdet03019]
    87946608 (CDEST_10106)
   03041 Spliceosome [BR:cdet03041]
    87946608 (CDEST_10106)
Messenger RNA biogenesis [BR:cdet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     87946608 (CDEST_10106)
Spliceosome [BR:cdet03041]
 Complex C
  Other components
   EJC/TREX
    87946608 (CDEST_10106)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    87946608 (CDEST_10106)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 WD40_Gbeta ANAPC4_WD40 Beta-prop_TEP1_2nd EIF3I Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_IFT140_1st Beta-prop_TEP1_C CFAP251_N Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N Beta-prop_Nup120_160 eIF2A Beta-prop_HPS5 WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 PAC11
Other DBs
NCBI-GeneID: 87946608
NCBI-ProteinID: XP_062782315
UniProt: A0AAX4INY0
LinkDB
Position
6:complement(join(3007676..3007839,3007901..3007945,3008002..3008368,3008423..3008661,3008728..3008801,3008866..3008978))
AA seq 333 aa
MPPPRTRLSLSKERFPAYLANLKSQPYHDPSSSSRGQTIRSIAWNPLGTLVATGSSDKTL
RVWNPEKPNVRFSTDLKGHSAPIEKVAFNPVKDAELCSVSNDGVVKFWDVRSKMCINEIK
GLGDAFTLVWAPDGQSLVVGNKTDNIFVLSPTQSTPVASHQQPTQTNQIAFCWSGKKIFL
TTGEGRTRILLYPDFKPAFQFGDGDEAREFALNGHTSSCLSAELQPTGRYLATGGSDSII
SLWDTTDWVCQRTITSMIGPVRSISFTFDGNFLVGGSDEGPGLDIRHAESGDHIHTFKTA
GPCPVVSWAPTKYCLAYSDLGILRIVGVDAEKK
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgccaccaccacgaacacggcttagtctttccaaggagagattccctgcctacttggcc
aatctcaagagccagccttatcatgatccgagctcgagttccagaggacagaccatacgt
tcaattgcttggaaccccctaggaactctggtagctacaggatcttcagacaaaaccctc
cgtgtttggaaccccgagaagccaaatgtacggttctcgaccgatttaaaggggcattcg
gcccccattgaaaaggttgccttcaatccggtaaaagacgccgagctgtgcagtgtcagc
aatgacggagtcgtcaagttttgggatgttcgatccaagatgtgtatcaatgagatcaag
ggtctgggagacgccttcactctcgtctgggcacccgacggtcaatcgttagttgtggga
aataagacggacaatatctttgtattgtcgccgacccagtcgacacctgtggcatcgcat
caacagccgactcagacgaatcagattgccttttgttggagcggcaagaaaatatttctc
acgactggtgagggcagaaccaggatcttactgtatccggatttcaaacctgccttccag
ttcggtgatggggatgaggccagagagtttgccctcaatggccatacgtcgtcctgcctt
tcagccgagttgcaaccaacaggacgctacctcgctactggtggttctgactccatcatt
tctttgtgggacaccacggattgggtttgccagcggaccattactagcatgattggcccg
gtacgatcaattagtttcacatttgatggcaatttcttggtcgggggcagcgacgaaggt
cctgggctggatattcgacatgccgagtcaggagaccatattcacacattcaagacagcc
gggccttgtcccgtcgtgtcttgggcgcctacgaagtattgcctagcctacagcgatctg
gggattcttcgcatcgtcggagtggacgctgagaagaagtga

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