Colletotrichum destructivum: 87947175
Help
Entry
87947175 CDS
T10409
Symbol
CDEST_10675
Name
(RefSeq) Putative mRNA decay factor PAT1 domain-containing protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
87947175 (CDEST_10675)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87947175 (CDEST_10675)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87947175 (CDEST_10675)
mRNA degradation factors
5'-3' decay
Decapping complex
87947175 (CDEST_10675)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
87947175
NCBI-ProteinID:
XP_062782882
UniProt:
A0AAX4IR19
LinkDB
All DBs
Position
7:join(470202..472516,472576..472864)
Genome browser
AA seq
867 aa
AA seq
DB search
MSFFGFDPTRPSHNTAAPGFSQAHDPFAGLSRGNIEDDDAVEFDDTYDGLGDQLEESGDA
FNDDTFGGGGNETISSAPVGKDFDFFGQTAKVSDAIEEEQVRYSRQVPSAKSVPAPAPVQ
PQQHYQQQPQQPQPQHQPPPNYYYQSQQAPRPVRTGYEKYQEAEPIPDLHVDASLWGMPS
KKPAFPEPSPQPQAASASRKVMSLEEVEKAMREQATQRTAQPALSESVPGVQGYPAERPD
YGYGRPEAVQQQSFQGSEHQQQHAGQAPQHHGHAHPVTILQRPQSISKPTPPIQNTPSPL
AQPPHPHAPPTQPTQILQNPNRLSGDAARIGAHSQPPHGHHQAHGHQAHRSQGSMGRVPQ
VAQQQPQQPPPHLAHLSEDEKAAYLDQETKRAKRNHKIWLLSKDNGLMTPQDKNFVTRIQ
LQQLVSATGNPIDQTNDDSLTEDFYYQVLSQIRGGQRQNPNQPLNNFAQTYLFQTGSRQG
NMRRQGRAAENHVQRMEQQVQRAVEAAKNKPKNPQLVIAGSLGKISFSNAKTPKPLLNIK
RTESSGDANRPGNGKRQGGSNGLDRKAILRNIEKVYNTIMKMEDHARFLPPPPANGNDEE
FHVKHQAWLETAQGLNAQLWNDLKVHEPIGATTIHPFIAFLSFPKGKKAIPRVFRHISFE
QRTTILTMIIIHLDQLDVVYGAQTTDGEVSLNAAMRESIELFSAAVMPSLFAYFNETELD
IVTGVLGLISTKLNIDLIAKTRVGCSMLTLILSRAELLKQGGGGSPQLWAEWEQTFDMFF
NKLEPTLHHIFPGSVNTGEDVVVWQLLAAVGVSANPEQQQRLVLAVKDRVLDTVAHAKTL
PGAMATTRLATVNLFMHSIGLDVDLLQ
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcttcggtttcgaccccacgcgcccgagccacaacacggcggcgccgggcttc
tcccaggcccatgacccgttcgccggcctttctcgcggcaatatcgaagatgacgatgcc
gtcgagttcgacgacacgtacgatggcctaggcgatcagctcgaggaaagcggcgatgcc
ttcaacgacgacacttttggaggtggtggtaacgaaactatctcttccgcccccgtcggc
aaggacttcgacttcttcggccaaacagccaaggtgtcggatgccatcgaagaggaacaa
gtccgctacagtcgccaggtcccgtcggcgaagtcagttcccgcacctgcgccggtccag
ccgcaacagcactaccaacagcagcctcagcagcctcagccgcaacaccagcctccgccg
aactactactatcaaagccagcaggctcccaggcctgtccgcaccggctatgagaagtac
caagaggcagagcctattcccgatctccacgtcgacgcatcactttggggcatgccttcc
aagaagcccgcctttcccgagccttccccgcagccgcaagccgcctctgctagccgcaag
gtgatgagtctggaggaggtggaaaaggcaatgcgagagcaggctactcaacgaactgcc
cagcccgctctttccgagtctgtgcctggcgttcaaggctacccggccgagcggcctgac
tacggctatggtcgaccggaggctgttcagcaacaatccttccagggttccgagcatcag
cagcagcacgcgggtcaggctcctcagcaccacggccatgcgcaccctgtcaccattctt
caacgaccccaatccatctccaaacccacgccgcccattcaaaacacccccagcccgctt
gctcaacctccccaccctcacgccccgcctacgcagccaacccagatcttgcagaatccc
aacaggctttcgggtgatgccgctcggatcggtgctcatagccagccgcctcacggccat
caccaagctcatggtcatcaagcgcatcgatcacaaggctccatgggccgtgttcctcag
gttgctcagcagcagccgcagcagccgccgccgcacctcgctcacctttccgaggacgag
aaggccgcctaccttgaccaagaaaccaagcgtgccaagcgcaaccacaagatttggctc
ttgtccaaggacaatggcctcatgacgcctcaggacaagaactttgtgactcgtatccag
ttgcagcaactggtttcggccactggtaacccgatcgatcagaccaatgacgactctctg
accgaagatttctattaccaggtgctaagccagattcgcggtggtcagcgccagaacccc
aatcagcccctgaacaatttcgctcagacctacctcttccaaactggaagccgtcagggt
aacatgaggagacagggccgggctgccgagaaccatgtccagcgaatggagcagcaggtt
cagcgtgctgtcgaggctgccaagaacaagcccaagaaccctcagttggtcatcgctggc
agtcttggaaagatctccttcagcaacgccaagacgccaaagcctcttcttaatatcaag
cgaaccgaaagcagcggagatgctaaccggcctggtaatggcaagcgacaaggcggctcg
aacgggctggaccgtaaggccatcctgcgaaacattgagaaggtctataacaccatcatg
aagatggaagaccacgcccgtttccttcctcccccgcccgccaatggcaacgacgaggag
ttccatgtgaagcaccaggcatggttggagacggcccaggggctcaatgcccagctctgg
aacgacctaaaggttcacgagcccattggtgccaccaccattcacccttttatcgcgttc
ctgtcgttccccaagggcaagaaggccatccctcgcgtcttccgacacatcagcttcgag
cagcgcaccacgatcctgaccatgatcattattcaccttgaccagctggatgttgtctac
ggcgcccagactactgacggcgaggtcagtcttaacgctgctatgcgcgagagcattgaa
cttttctctgccgctgtcatgccgagcctgtttgcctacttcaacgagacggagcttgat
attgtgacgggtgtccttggtcttatcagcaccaagttgaacattgacctcatcgccaag
actcgcgtgggctgctcgatgttgactctgattctgagccgagccgagctcctgaagcaa
ggtggtggaggctctcctcagctgtgggccgaatgggaacaaaccttcgatatgttcttc
aacaagcttgagcccactcttcaccacatcttccccggcagcgtcaacacgggagaagac
gttgtcgtttggcagcttctcgcggccgttggtgtcagtgccaaccccgaacaacagcag
cgcctggttcttgctgtcaaggaccgcgtgcttgataccgtcgctcatgcaaagacgctt
ccgggcgccatggccacgacgcggttggccactgtcaaccttttcatgcactcgattggc
ctggatgttgatttgcttcagtaa
DBGET
integrated database retrieval system
