Colletotrichum destructivum: 87948821
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Entry
87948821 CDS
T10409
Symbol
CDEST_12321
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03020
RNA polymerase
cdet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
87948821 (CDEST_12321)
09124 Replication and repair
03420 Nucleotide excision repair
87948821 (CDEST_12321)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87948821 (CDEST_12321)
03400 DNA repair and recombination proteins [BR:
cdet03400
]
87948821 (CDEST_12321)
Enzymes [BR:
cdet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
87948821 (CDEST_12321)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
87948821 (CDEST_12321)
DNA repair and recombination proteins [BR:
cdet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
87948821 (CDEST_12321)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
87948821
NCBI-ProteinID:
XP_062784528
UniProt:
A0AAX4IVQ0
LinkDB
All DBs
Position
8:join(1562277..1562633,1562697..1567541,1567593..1567643)
Genome browser
AA seq
1750 aa
AA seq
DB search
MANLYFTHSSAPIKTVEEIQFGLMAPEEIKNMSVCHCVYPETMDETRTKPRDGGLNDPLL
GSIDRQFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRS
DPEFLQAVNTRDPKVRFNRVWNICKKKTRCENEVKEQKPDDGEYGLNMKQAPVNHGGCGN
IQPRVRHKALQLIAKFEAQGEDGVKKKEEPPITPEMAHNILRRISDDDLRDMGLNLEYAR
PEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSNVKQAIREGSPAH
IAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF
SARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGRLHELVQNGPNEHPGAKYVIR
TDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQPSLHKESMMGHRVRVMPYST
FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPINIVSPQRNGPLMGIVQDT
LAGAYKLCRRDVFLNKEQVMNIMLWVPNWDGIIPPPAIVRPRPRWTGKQIMSMAVPNIVS
LHSAPDSKEDNPLKDEGLLIQSGQIMYGLLSKKNIGAASGGIVHIVYNEHGPEAAMKFLN
GVQQTVNYWLLHNGFSIGIGDTIPDKVTIEKVQVHIDEHKAEVEEFTRQATANELEPLPG
MNIRETFESKVSKALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQ
QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT
AVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGLDAIYIEKQRMDHLN
MSNKKFADRFRLDVMAENRPEELEWLEYGNEIAGDPAVQQLLDEEFEALTADRKQVRQIN
FKRKDDESMQLPLNIVRLMETSKKLFAVEDFQRSDLRPQDVIPAVQAMLNRMTIVRGNDD
ISKEADRSATILFKAQIRSRLAFKRIACQQRLNKMAFEHVLGELEARWDRAFVSPGEMVG
VIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEDN
ASQEAAKALRSTVEHTTLRSVTAVTEIYYDPEITSTNIPDDLDMVESYYLIPDESHDKTE
DQSRWLLRLTLDRQKLLDKELTVEDVARRIKEEYPNDLAVIFSDNNAEEQIIRIRPMHAG
NDKDEDGEKKIEDDVMLKRLETHLLDTLSLRGVKGIERAFLNKETKLIETDDGALLAAKA
DERCSEWYLDTSGTALRQVLAVDGVDSNRTYTNHLWQIVEVFGIEAARAALVRELTQVLA
FDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGE
LDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVISDNSRMGLMPGMPVKGGEAGGAA
TPYDSGSPMADSGYMSLSSPAAGNFSPIVGAGSDSPTGFNTDYNGFAGIGSVGHYPGASP
GRPTSPFSTSPTSPFQSGYGGYSPSSPNAGYSPTSPLIDGAAGRYGATSPQFSPSSPSFS
PTSPMLRPTSPASPNYSPTSPSYSPASPSSPRHYSPTSPAQYASPTSPSYSPASPNYSPA
SPNLHGAGPTSPSYSPASPTWSPTSPAQYSPTSPSFQQTPGAQQSPTSPSYSPTSPSWSP
RTPGPGGSGN
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctttactttacgcactcgagtgcgccgatcaagacggtcgaggagattcag
tttggccttatggctcccgaggagatcaagaatatgagtgtctgccactgtgtctacccc
gaaaccatggacgagactcggacgaagcctcgtgatggcggtctgaatgacccgcttctc
ggttccatcgatcggcagttcaagtgcaagacctgctcccaggcgatgggcgaatgtcca
ggtcattttggccacatcgagctggctaagcccgtctaccatcctggctttatcaagaaa
gtcaagaaggttctggagattgtctgccataattgcagcaaggtcttggccgatagaagc
gatcctgaatttctccaagctgtgaacacaagagaccccaaggttcgcttcaaccgcgtc
tggaatatctgcaagaagaagactcgttgcgaaaatgaagtcaaggaacagaagcctgat
gatggagagtacggcctgaacatgaagcaggctcctgtcaaccacggtggctgtggcaac
attcagcctagggtgcggcacaaagccttgcagctgattgcaaagttcgaggcccaaggc
gaggatggcgttaagaagaaggaagagccccccatcaccccggagatggctcataacatt
ctgcgccgcatcagcgacgacgacctgagagacatgggcctcaatctcgagtacgcccgt
ccagagtggatgattgttaccgtccttcccgtcccgcctccacccgtacggcccagtatt
tccatggacggtactggtcaagggctgaggaatgaagatgatttgacatacaaactgggc
gatatcatccgagccaacagcaacgtcaagcaagccattcgcgaaggctcacctgctcac
atcgcccaagatttcgagcagctgctgcagtatcatgtcgccacttacatggataatgat
attgctgggcagcctcgcgctttgcagaagagtggccgcccagtgaaggccatccgtgcc
cgcctcaagggaaaggagggtcgccttcgcggtaacttgatgggaaagcgtgtcgacttc
tcagcacgtactgtcatcactggtgacgccaacctttccctcgatgaggttggtgtgccc
cgaagcatcgcaagaacgttgacctatcccgagacggtcactccttacaacattggaaga
ttgcacgagctggtacagaatggtccgaacgagcacccaggtgctaaatacgtcatccgc
accgacggtacgaggattgaccttcgtcaccaccgccgtgccggacaaatttctctcgag
tacggctggaaggttgagcgtcacttgatcactggcgattatatcatcttcaaccgccag
ccatctcttcacaaggagtccatgatgggtcacagagtccgcgttatgccttactcgact
ttccgtctcaacctgtccgtcacgtcgccgtacaatgccgatttcgacggtgacgaaatg
aatcttcacgtccctcaaagcgaagagactagagctgaggtcaaggagctctgcctggtt
cccatcaacattgtttctccgcaaagaaacggccctctaatgggtatcgtgcaggacacc
cttgccggcgcctacaagctttgccgtcgtgatgtgttcctcaacaaggagcaggttatg
aacatcatgttgtgggttccaaactgggatggtatcattcccccgccagccatcgtgcgg
cccagaccaagatggacgggcaagcagatcatgagcatggcagttcccaatattgtcagc
ttgcacagcgctccggactcgaaggaggataaccctcttaaggacgagggtctcctcatt
cagtcggggcagatcatgtacggtttgctctccaagaagaacattggtgccgccagtggt
ggtatcgtccacatcgtatacaacgagcacgggccagaggcggctatgaagttccttaac
ggggttcagcaaaccgtcaactactggcttctacacaacggtttcagtatcggtattggt
gatacgattcccgataaggttaccattgagaaggtgcaggtgcacattgacgagcacaag
gctgaggtcgaggagttcacaagacaagctactgctaacgagctggagcctctgcctggt
atgaacattcgtgagaccttcgagagcaaggtttccaaggctcttaacacagcccgtgac
aaggccggtactactacacagaagagtttgaaggatttgaacaacgctgtcaccatggcc
tcgtctggttccaaggggtcatccatcaacatttcccaaatgactgccctcgtcggacag
cagatcgtcgagggtaagcgtattcccttcggcttcaagtaccgcacgctcccccatttc
accaaggacgactactctcccgaggctcgcggtttcgtcgagaactcctacctccgtggt
cttacgccgagtgaattcttcttccacgccatggctggtagagagggtttgatcgatact
gctgtcaagactgccgaaaccggttacatccagcgtcgtctcgtcaaagcgcttgaggac
gtcagcgccaagtatgacggtaccgtcagaaactctcttggcgatattctgcagttcctg
tatggtgaagacggcctggacgccatctacatcgagaagcaacgcatggatcacctcaac
atgtccaacaaaaagttcgccgaccgtttccggctcgatgtcatggccgagaacagacct
gaagagcttgagtggcttgagtacggcaacgaaatcgcgggcgacccggcggttcagcag
ctcttggacgaagaatttgaggcactcaccgccgaccgcaagcaggttcgccagatcaac
ttcaagaggaaggatgatgaatcgatgcagcttccattgaacatcgttcgtctcatggaa
acctccaagaagctcttcgctgtcgaggatttccagagaagcgacttgcgtccacaagac
gttattccggcggttcaggccatgctgaacagaatgaccatcgtccgtggcaacgatgac
atctccaaggaggctgaccgcagcgccacgatcctcttcaaagcacagattcgctcacgc
cttgccttcaagcgcattgcttgccagcagcgcctgaacaagatggctttcgagcacgtc
ctaggagagttggaggctcggtgggaccgagcctttgtcagtcctggtgaaatggttggt
gttatcgcggcccagtctatcggtgagcctgccacgcagatgacgctgaacaccttccat
tttgccggtgtttcttccaagaacgtgacgctcggtgttcctcgtctcaaagaaatcctc
aacttggcccagaacatcaaaaccccttccatggtagtctacttgagcggcgaggacaac
gctagtcaagaagctgccaaggctcttcgcagcacagtcgagcacacgacgctgcgctca
gtcaccgcggtcactgagatttattacgaccctgagattacgtcgaccaacatccctgat
gatctggacatggtcgagtcttactacctcattcccgacgaatctcacgacaagactgaa
gaccagtccagatggttgctgcgtctcactttagaccgccagaagcttcttgacaaggag
cttacagtcgaagacgttgctagacgcatcaaggaggagtaccccaacgatcttgcagtg
attttcagtgataacaacgctgaagagcaaatcattcgtatccgccccatgcacgccggc
aacgacaaggacgaagatggcgagaagaaaatcgaagatgatgtcatgctgaagagactg
gagactcatctgctcgacactctctccctccgtggtgtcaagggcatcgagagagctttc
ttgaacaaggagaccaaacttatcgagaccgatgacggagcgttgttggccgccaaggct
gatgagcgctgttcggagtggtacttggacacatccggaactgctcttcgccaggtcttg
gccgtcgacggcgtcgattccaaccgtacctacaccaaccacttgtggcagattgttgaa
gttttcggtatcgaggcggccagagcggctctggtccgtgagttgacccaagtgcttgcc
tttgacggttcctacgtcaatcacagacatcttgctcttctttgcgatgtcatgacctac
aggggtacgatctctgctgtaactcgtcacggtatcaaccgtgccgacaccggtgccctc
atgcgttgttccttcgaagagactgtcgaaattctcctcgaggctgcagccgtgggcgaa
ttggacgactgccgcggcatctccgagaacgtcatgcttggtcagatggcacccatgggt
actggtcactttgatgttctcctcgatcccaagatgctggagactgtcatcagcgacaac
tcgcgtatgggtcttatgcctggcatgccggtcaagggcggcgaggcgggcggggccgcc
actccttacgactccggatcacccatggccgactccggttacatgtctctcagctcgccc
gctgccggcaacttctctcccattgttggcgcgggctccgattctcccaccggctttaac
accgattacaatggttttgctggcatcggctccgtcggccattacccgggcgccagcccg
ggacggccgactagccccttcagcacgtctccaacctcgcctttccagagtgggtacggc
ggatactcaccatcgtcgcctaacgctggctactctccgacttcgcccctcatcgacggt
gctgctggccgttacggtgccacttcgccccagttcagcccttcgtcgccgtccttctcg
ccgacgtcgcctatgctgcggcctaccagccccgcgagccccaactacagcccgacgtcg
ccgagctactcgccggcatccccctcttcgcccaggcactactcgccgacatcgccggct
cagtatgcctcgcccacttccccgagctattcgccggccagtcctaactacagcccggca
tctcccaaccttcacggggctggcccaacgtcgccgtcgtactctcctgcgtcaccgaca
tggtctccaacttcaccggctcagtactcccctacgagtccgagcttccagcagactcca
ggagcgcagcagtcgccgaccagccccagctactcaccaacatcgccttcctggtctccc
cgaactcccgggccgggcggttctggcaactga
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integrated database retrieval system
