Colletotrichum destructivum: 87949050
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Entry
87949050 CDS
T10409
Symbol
CDEST_12550
Name
(RefSeq) Putative Zinc finger, CCCH-type, CPSF complex subunit CPSF4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cdet Colletotrichum destructivum
Pathway
cdet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87949050 (CDEST_12550)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87949050 (CDEST_12550)
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87949050 (CDEST_12550)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
87949050 (CDEST_12550)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
87949050 (CDEST_12550)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_9
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
87949050
NCBI-ProteinID:
XP_062784757
UniProt:
A0AAX4IWD3
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Position
8:complement(2246876..2247631)
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AA seq
251 aa
AA seq
DB search
MAAVAPRPETTHILNHAPTATSFSFTPFLRQTYRHELSSDRPQCKSFLAGHCPLGASCPD
RHASSTSSNPSGGPSLVCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFMRNGYCSNGEE
CLYLHIDPQSKLPPCPHYDKGFCPLGPRCSKKHVRRKLCAYYLVGFCPEGPGCKYGAHPR
WRTDLEKPSAKVEGEDEPKRDAEREDGESFQQQRDRQRDMHDDRGHGDRRHGGRGGKWRD
RGNRRFRGRGH
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtcgcgccccggccggaaacaactcacatcctcaatcacgccccgacggcg
acgtcgttctccttcacgccgttcctccgccagacctaccgccacgagctctcgtcggac
cgcccgcaatgcaagtcgttcctcgcaggtcactgccccctcggcgcctcctgccccgat
cgccacgcgtcgtcgacatcatcaaacccgtcgggcgggccctcgctcgtctgtaagcac
tggctccgcggcctttgcaagaagggtgagtcgtgtgagttcctgcacgagtataacctg
cgcaagatgcccgagtgcaacttcttcatgcgcaacggctactgctccaacggcgaggag
tgtctgtacctccacatcgacccccagtccaagctgccaccctgtccgcactacgacaag
ggcttctgcccgttgggcccgcgctgcagcaagaagcacgtccggaggaagctgtgtgcg
tactacctggtcggattctgccccgaggggcctggctgcaagtacggcgcgcacccgcgg
tggaggacagacctggagaagccgagcgccaaggtcgagggcgaagacgagcccaagagg
gatgcggagagggaagacggcgaatcgttccagcagcagcgcgataggcagagggacatg
cacgacgaccgcggacacggggaccggaggcacggcggccgtggaggcaagtggcgcgat
cggggtaacaggaggttccgcggccgtggtcactga
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