Colletotrichum destructivum: 87950657
Help
Entry
87950657 CDS
T10409
Symbol
CDEST_14157
Name
(RefSeq) Putative RNA polymerase, alpha subunit, RNA polymerase Rpb1, domain 3, RNA polymerase Rpb1, domain 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
cdet Colletotrichum destructivum
Pathway
cdet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
87950657 (CDEST_14157)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdet03021
]
87950657 (CDEST_14157)
Enzymes [BR:
cdet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
87950657 (CDEST_14157)
Transcription machinery [BR:
cdet03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
87950657 (CDEST_14157)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
87950657
NCBI-ProteinID:
XP_062786364
UniProt:
A0AAX4J0Q3
LinkDB
All DBs
Position
9:join(3550191..3550279,3550355..3550466,3550522..3550671,3550721..3554740)
Genome browser
AA seq
1456 aa
AA seq
DB search
MATTTTVTPVKSQLVDKLPKRFKGIKFGIQSNQDIANQAVLEVSDRLLYDIEKNRAPYQH
GPLDPRLGTSSKTGKCATCQESLQNCTGHFGHVRLPLPAFHIGYLRFVMMILQDICKDCG
KVLLTESEKRAFLKELRRPLLDNLRRSQICKRINEQCRKVKNCMYCGSVQGQIRKVGVLK
LAHDKFVTYNKSTSAKKVPPESKIKFDESFSEARKNNAELDKHLRKAMEDMNPLRVLNLF
KMISPTDCELLGLDPAEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLADIVWV
SGMIRSALQKGSPVQTIMEQWEYLQLQVAMYVNSDVPGLQQPGFGKAVRGFCQRLKGKQG
RFRGNLSGKRVDFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKLKECVRN
GPSIWPGAQQVIKKDDGGYKISLKFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSLH
KLSIMSHLVKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNL
ATPKNGEPVIAATQDFITAAYLLSSKDNFFDRKTFTYICMHMMDGKVHLDLPPPAVLKPK
ALWTGKQVFSMMMRPNKDSPVKINLDAKCREYKARAGQCPDMDPEDAWLVIRNSEVMCGV
MDKSTVGDGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGIGDVFPTEKL
LDKKRTLVKNASIEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKLRTQAGSHCIE
TLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPP
SKGFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDT
VRTSGGGIVQFQFGADKLDPVDMEASAKPVNFDRTFSHAENLTWDNNERALLPDEIVKYC
DNMLSRERARYPRKSLLGDLTLDYDNEEERYTDEHEGARDFLRSLESYVGGRAEKLRRLM
EMTGLTATADSMDVDVDEDEIRHKKAFADKVAKMSETTLKLFIRLCLEKYKKAHVEPGHA
VGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKVISTPVITCPLVQN
REMTAARIVKARIEKTFVEDILSYIEDEWFAESGSVVLKVDMDALSDMQLGITLGDVAEA
ICKHKKMKVSRSDMHIGAGRIEIRVRLDESAAAKRAIKAKPVDELGDLLVRANYLRRTIP
TVAISGYPEATRAIIQTSEQETHTVLVEGYGLLACMNTEGVEGRRVKSNNVMECRDVLGI
EAARSTIAYEIGEVMGDMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFE
KTPDHLFEAAAGMKTDQIEGVSECIIMGQTMTVGTGAFHVVRRLALEKGDVGQRKTAFED
AWAAETALKKKSRRNI
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacaaccaccgtgactccggtcaagtcccagcttgtcgacaagctgcccaag
cgtttcaagggtatcaagtttggcattcagtccaaccaggatatcgcgaaccaagctgtc
ctcgaagtctccgaccgcctcctctacgacattgagaagaacagggcaccctaccaacat
ggtccactcgaccctcgtctcggtacctcgagcaagacggggaaatgcgcaacatgccag
gagtctctccagaactgcacaggccacttcggtcatgtcaggcttcctctgccggccttc
catatcggctacttgcgcttcgtcatgatgatattgcaggatatctgcaaggattgcggc
aaagtcctcctcacagagtctgagaaacgggccttcttgaaggagctccgacgaccactt
ctggacaatctgcgacggtcccagatttgcaaacgcatcaacgagcagtgtagaaaggtc
aagaactgcatgtactgcggttccgtccagggtcaaattagaaaggtcggcgtcctcaag
ctggcccacgacaagttcgtcacatacaacaagtccacctcggctaagaaggtgcctccc
gagagtaaaatcaagttcgacgagtcgttcagcgaggcgaggaagaacaatgccgagttg
gacaagcatttacgcaaggccatggaggacatgaaccctttgagagtactcaatcttttc
aaaatgatcagtcccaccgattgcgagcttctcggcctggatcccgcggaaggccgtccc
gagatgttcatctggcagttcctccctgcgccccccgtgtgcatccgaccctcggtcgcc
caagacaatgccagtaacgaggacgatattacaacaaaactcgccgatatcgtatgggtc
agcggcatgatccgctcggcgctgcagaagggctcgccagtacagaccatcatggagcag
tgggagtatcttcaactccaggtcgccatgtatgtcaacagtgatgtaccgggcctgcag
caaccgggattcggcaaggctgtacgaggtttctgccagcggttgaagggaaagcagggt
cgattccgtggcaacctgtccggaaagcgtgtcgatttctccggacgtaccgtcatttcg
cccgatcccaaccttggtatcgatcaagttgctgtcccccagcttgtcgccaagaacctg
acgtacccggagcgagtgtcggattacaacatcgagaagctgaaggagtgcgttcgcaac
ggacccagcatctggccgggtgctcaacaagtcatcaaaaaggacgacggaggttacaag
atatcgctgaagttcggtaacagaaaccaagtcgcccaagacctcaagatcggcgatgtt
gtcgagcgtcacctggaggacaacgacatcgtcctcttcaaccgtcagccatcccttcac
aagctcagtatcatgagtcacttggtcaaggtgcgaccttggaggacattccgcctaaac
gagtgtgtttgtggcccgtacaacgcagatttcgacggagacgaaatgaacctccacgtt
ccgcagacagaagaagcccgagccgaggccattaacctcatgggtgtcaagcacaacttg
gcgacgccgaaaaacggagagcccgtcattgctgccacgcaggatttcatcacggctgct
tatctcttgagcagcaaagacaacttcttcgaccgcaagacgttcacctacatttgcatg
cacatgatggatggcaaagtccacctggacttgcctccccccgccgtcttaaagcccaag
gctctgtggaccggcaagcaagtcttcagcatgatgatgcgtcccaacaaggacagcccg
gtgaagatcaacctggacgccaagtgcagagagtacaaggccagggccggacagtgcccc
gatatggatcccgaagacgcatggttggttattcgcaactccgaggtcatgtgcggcgtc
atggacaagtcaacagttggtgacggtaaaaaggactcggtcttttacgtcatcctgcga
gacttcggcccagatgcggcagtcgttacgatgaaccgattggcaaaactctgtgctcgg
cacctgaccaaccgtggcttctctatcggcatcggtgacgttttccccacagagaagctg
ttggacaagaagcgcactctcgtcaagaatgcgagtatcgaggttgacgttctgatcgac
aagtacaagaagaacaagctggagaaggctacaggctgttcgatggagcagaccctcgag
aactccatctcgggtcttctcagcaagctcagaacacaagccggttcccactgtatcgag
acgcttagcaagaacaatgcgccgctggtcatggccaagtgcggatccaagggttcgaat
atcaacgtggcgcaaatggttgcgcttgtcggacagcaaattatcggtggcaagcgtgtt
gccgacggtttccaggacaggacacttccccatttccacaagaacgcgccgcaaccgcca
tccaagggtttcgtcgagaacagtttctattccggtctattgcccaccgagtttatcttc
cacgccatgtctggacgtgaaggtctggtcgataccgctgtcaagacagccgagacagga
tacatgtctcgtagactgatgaagtctttggaagatctttcaacccaatacgacgacaca
gtacggacttcgggcggcggtattgttcagttccagtttggtgctgacaaactggatcct
gtcgacatggaggcctcggcgaaacctgtcaactttgaccgaaccttttcccacgctgag
aacctcacctgggacaacaatgaacgggccttgcttcccgacgaaattgtcaaatactgc
gacaacatgctctcccgggagcgggcgcgctaccccaggaagtctctgctgggcgatctg
actctcgactacgacaacgaggaggagaggtacaccgacgagcacgaaggcgcacgagat
ttcttgcgatctctcgagtcttacgtcggtggccgagccgagaagctccgtcgcctgatg
gagatgaccgggctcactgcgacagccgacagcatggacgtcgatgtcgacgaggacgag
atcaggcacaagaaggcatttgctgataaggttgccaagatgtcggagacgacgttgaag
ctcttcatccggctgtgcttggagaagtacaagaaagcacacgtcgagcctgggcacgcc
gtgggggccgtcggcgcgcagtccattggtgagccaggaacgcagatgacattgaagacc
ttccatttcgccggtgtcgctggtatgagtatcacacagggtgtgccgcgtatcaaggaa
attatcaacgcgtccaaggtcatcagcactcccgtcatcacgtgcccgctggtgcagaac
agggagatgacggccgctcgaatcgtcaaggctcgtatcgaaaagacctttgtcgaggac
attctgagctacatcgaagacgagtggttcgcggagtcgggaagcgtcgtactgaaggtg
gacatggatgctttgtcagacatgcagcttggcatcacgctgggcgatgtggccgaggcc
atctgcaagcacaagaagatgaaggtgtccaggtctgatatgcacatcggcgcgggtcga
atcgagatccgtgtccggctggacgagtcggccgccgccaaacgggcgatcaaggcgaag
ccagtggacgagcttggcgaccttttggtacgggccaactacctccggcgaacgataccg
acggtggccatctcgggctatcccgaggccactcgtgccatcatccagacgtcggagcag
gagacacacaccgtcctggtggaaggatacgggcttctcgcttgcatgaacacggaaggc
gtggagggacggagagtcaagtcgaacaacgtgatggagtgccgagacgtgttgggcatc
gaagccgcgagaagcacgatcgcttacgaaattggcgaagttatgggagacatgaacatc
gacccgcgtcacatgcagctgctcgcagatgtcatgacgtacaagggcgaggtcctcggc
atcaccagattcggtctctccaagatgagagacagcgttctgcagttggcttcattcgag
aagacgccagaccatcttttcgaggctgcggctggcatgaagacagaccagatcgaaggt
gtgagcgagtgtatcatcatgggtcagacgatgacggtgggaacgggtgcgttccatgtg
gttcggcggcttgcgctggaaaagggagacgttgggcagcgcaagacggcgtttgaagat
gcgtgggcggccgagacggcgctgaagaagaagtcgcgacgaaacatttaa
DBGET
integrated database retrieval system
