Colletotrichum destructivum: 87951127
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Entry
87951127 CDS
T10409
Symbol
CDEST_14627
Name
(RefSeq) Putative sm-like protein Lsm7/SmG
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cdet Colletotrichum destructivum
Pathway
cdet03018
RNA degradation
cdet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
87951127 (CDEST_14627)
09123 Folding, sorting and degradation
03018 RNA degradation
87951127 (CDEST_14627)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdet03019
]
87951127 (CDEST_14627)
03041 Spliceosome [BR:
cdet03041
]
87951127 (CDEST_14627)
Messenger RNA biogenesis [BR:
cdet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
87951127 (CDEST_14627)
mRNA degradation factors
5'-3' decay
Lsm complex
87951127 (CDEST_14627)
Spliceosome [BR:
cdet03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
87951127 (CDEST_14627)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
FoP_duplication
DUF150_C
Motif
Other DBs
NCBI-GeneID:
87951127
NCBI-ProteinID:
XP_062786834
UniProt:
A0AAX4J2L0
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All DBs
Position
10:complement(join(1114506..1114636,1114701..1114772,1114840..1115053))
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AA seq
138 aa
AA seq
DB search
MADRGSHRGGGRGGGGGGGYRGRGGGRGGGGDRGAPQGASGDRERPKKENILDLSKYMDK
QITVKFNGGREVTGTLKGYDALMNLVLDDVHEVMRDEEGNERTRSLGLVVARGTLLVLVS
PVDGSEPIANPFAQPDEE
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaggatcgcacagaggcggtggccgaggaggtggtggcggcggcggctat
cgcggacgtggaggaggacgcggcggcggcggcgaccgtggagcaccccagggggccagc
ggtgaccgcgagagacccaagaaggagaacatcctggacctgtcaaagtacatggacaag
cagattaccgtcaagttcaacggtggccgtgaagtcaccggcacactcaagggatatgat
gcattgatgaacctcgtcttggatgatgtccatgaggtcatgagagacgaggaaggaaat
gaaagaacgagatcccttggcctcgtcgtcgctcgcggaactctgcttgtcctcgtcagc
cccgtcgacggcagcgagcccatagcgaatccctttgcgcaacccgacgaggaatga
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