Cryptococcus deuterogattii: CNBG_0010
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Entry
CNBG_0010 CDS
T09796
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNBG_0010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdeu03021
]
CNBG_0010
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_0010
Transcription machinery [BR:
cdeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNBG_0010
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CNBG_0010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf-CCHC
zf_CCCH_4
zf-CCCH_4
zf-CCHC_2
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
88176265
NCBI-ProteinID:
XP_062880181
UniProt:
A0A095C0H8
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All DBs
Position
4:1437422..1438579
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AA seq
332 aa
AA seq
DB search
MAAASNSAPLDPKLGRAVDFVRPDFHQVNLDLENYLKTERNFKLDADQQICPLSITPLGC
PLPPSQCPYRHTTPSQLNFKPPPPLPAHPREREKKLTVCKHYLRNLCKMGDNCEYTHDFN
LRTMPECIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCEA
YAAGFCPDGKDCKLAHPSPDRPPPESYVNPIPPDPEAFNGPPPQLPAGYGRWREYKYDPN
AVVVPAAAWVEGGSLSGWRAGGFLSANARRDNQRNRDNDDEGGRGGGGERKGGWQKDLST
VLCFRCNQYGHFANNCPNQYVPGDRGGGRRRE
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcctcgaattctgcaccattagatccaaagctcggacgagcagtagatttt
gttcgccctgatttccaccaagtcaatctcgacctggaaaactacctcaaaactgagcgc
aacttcaagctcgacgcagaccaacagatatgtcccctgtccatcacacctctaggatgc
ccccttccgccttcacaatgtccttatcgtcacactactccctcacaacttaatttcaag
ccaccacctcctctcccggcccaccctcgagagcgagaaaagaaactaacggtctgtaag
cactatcttcgaaacctctgtaaaatgggtgacaattgcgagtacacgcacgactttaac
cttcgcacgatgccagagtgtatatggtttgtcaaacaaggcaaatgtgagctgggagga
gaatgcctgtatttccatcccagagacagaagagtcgagtgtccggattacaatagaggg
ttttgcgtactaggccctaattgtccgaggaagcatataaggaggaggctgtgtgaggct
tatgctgctggattttgccctgatggcaaggactgcaaattagctcatccgtctcccgac
cgaccgcccccagagtcatatgtcaaccctatcccgcctgaccccgaagcctttaacggc
ccaccaccccaactgcctgcaggctatggtcgttggcgagaatacaagtatgatcccaat
gcagtggttgttccagctgcggcgtgggttgaaggtggaagtttatctggttggcgagct
ggaggattcctgtccgcgaatgcaagaagagataatcagaggaatagagacaatgatgat
gaaggtggacgcggtggcggaggagagaggaaaggtggctggcaaaaagaccttagcacg
gtactttgcttcaggtgcaaccagtatggccactttgccaataattgtcctaatcaatat
gtgcctggagacagaggaggcggtagacgacgggaatga
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