Cryptococcus deuterogattii: CNBG_0473
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Entry
CNBG_0473 CDS
T09796
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBG_0473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdeu03041
]
CNBG_0473
Spliceosome [BR:
cdeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CNBG_0473
Complex C
U5 SnRNP specific factors
CNBG_0473
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_14
PRP1_N
HAT_PRP39_N
TPR_19
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_6
TPR_21
ANAPC3
TPR_CcmH_CycH
FAT
ARM_TT21
TPR_12
Cdc6_lid
Motif
Other DBs
NCBI-GeneID:
88176710
NCBI-ProteinID:
XP_062880626
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Position
4:complement(196975..200230)
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AA seq
942 aa
AA seq
DB search
MSNVGTVKHIPKEVRYNFLNMAAPASYVAGLGRGASGFTTRSDIGPARAGPSAEVVAEAQ
ARRGEEEIPDPDAFQDPDDERNLFAGTVYEADDEEADRVWDSVDARMDARRKARRDAAEA
KAAAEERARNPKLQTQFADLKRSLSSLNDADWDAIPEAGNLTGKRRKANLRMEENQNGRS
YNVSDTVIADAVKRNAMVGELDPAEAGIGIDGTETDLVSIGNARDRVLSLQLDQATRDAS
NGSSTSIDPKGYMTALNSQIVQTDAQIGDIKQARQLLQNLIQSNPKHAPGWIAAASLEVH
AKKMVAARKIIAEGCEKCPKNEDVWFHAAELNTPENAKVILGRAIQHVPQSVKIWLKAAS
LETDINAKKRVLRKALEFVPNSVGLWKETVNLEDDPEDARVLLTRAVEVIPNSVELWLTL
ARLETPENAKQVLNSARKRIPTSHEIWIAAGRLAEQSPTAVAVKPEVKMEDEAEYEAEQR
KKLAQQVNKLMAGAVNSLRKNQVILSREQWLQEAEKCEQDGSPLTAQAIVKATIAQDVEE
EDRRSVWIEDAERATKGGFYEVARACYAVTLEAFPTTPSVWRKAAEFEKAHGTPDAVQEI
LAQGSQQCPHAEVLWLMAAKEKWVGGDIPGAQAILAEAFKANEDSESIFLAAAKLAAETG
EMEAAIQILEKAKAQADTERVWMKSAVLLRQLGKLDEALSTLEVAIKKFASFDKLHMIRG
QIYESRNEVALARNAYAQGCRSCPKSIPLWILSARLEEKAGVTIKARALLEKARLHNPKN
DELWAESIKIEERTGSTQQAKSVLARAMQECPASPLLWSMAIFMEAPQQRKGRSVDAIKK
AGEHPAVILAVARNFWSERKIEKTRQWMANAITADEDWGDAWGYWLKFERQHGEKERQEA
VIEKCIAASPHHGPVWQSVSKDLANVGKSTREILELVADKIE
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgtcggtacagtgaagcatattcccaaggaagtgcgatacaacttcctcaac
atggccgctccggcgagctatgttgctggtctcggtcgaggtgcttctggtttcacaact
cgatccgatattggtcccgcccgagctggccctagtgcagaggttgttgcggaagctcaa
gctcgccgtggtgaagaagaaatccctgatccagatgcttttcaagatccagatgacgaa
aggaacttgtttgcgggtacagtttatgaagcggatgatgaagaggccgacagggtgtgg
gacagcgtcgatgccagaatggatgcgagaaggaaggccagacgggacgctgcagaagcg
aaagctgcggctgaagagcgcgctcgcaatcctaaacttcaaacacaatttgcagactta
aagcgatctctctcgagccttaacgatgctgactgggacgccatccctgaagcaggaaac
ttgactgggaaaaggagaaaagccaacttgcgaatggaagaaaatcaaaatggaagaagc
tacaatgtcagcgacactgttattgcagatgccgtgaagagaaatgctatggtaggagag
ttggatccggcggaagccggtattggtatcgatggcaccgaaacagatcttgtttctatc
ggtaatgccagagacagagtactgtcactgcagcttgaccaagccacacgagatgcctca
aacggctcttctaccagcatcgaccctaagggctatatgaccgctcttaacagccaaatt
gttcaaacagatgctcaaatcggtgacatcaagcaggctcgccaactcttgcaaaacctc
attcagtccaatccgaaacacgccccaggatggatcgccgctgcctctttggaagtacac
gccaaaaagatggtcgctgccagaaagattatcgctgaaggatgtgagaagtgtccgaag
aacgaggatgtttggttccatgccgctgaactcaacacaccggagaatgcgaaagtcatc
ttgggtcgagctatacagcacgttcctcaatctgtcaaaatctggctcaaggctgcctct
ctagaaacagacatcaacgccaagaagcgtgttctccgaaaagctcttgaattcgttccc
aactctgttggattgtggaaagagactgtcaatctcgaagatgatcccgaagacgcccgt
gtcctccttactcgtgctgtcgaagtcattcccaactctgtggagctgtggctcacttta
gcgcgtcttgaaactcctgaaaacgccaagcaggttctcaattctgcacgcaagcgtatt
cctacctcccacgaaatctggattgctgccggtaggcttgctgaacagtcacctaccgcc
gtggctgtcaagccagaggtcaagatggaggatgaggcggagtacgaggctgagcagaga
aagaagcttgctcagcaggtcaacaagctcatggctggtgctgtcaactcattacgcaaa
aaccaggtcatcctttcgcgagaacagtggttgcaagaggctgagaaatgtgaacaagac
ggctcacctcttacagcacaggctattgtgaaggctaccatcgcccaggacgtcgaagaa
gaggacaggcggtctgtctggattgaagatgcggagagggcaacgaaaggcggattctac
gaggtcgcgagggcttgttacgctgtcactcttgaggctttccctactaccccgtcagtc
tggagaaaagccgctgagttcgaaaaggcccacggcacacccgatgctgtccaagaaatt
ctggcccagggctcccaacaatgtccccatgcggaggtcctctggcttatggccgcgaaa
gagaaatgggtcggcggtgatatccccggggctcaggccatccttgccgaagctttcaag
gcaaacgaggattccgaatctatcttccttgctgccgccaaactcgcagctgagaccggt
gagatggaagctgctatccaaattctcgagaaggccaaggcacaggcggacacagagagg
gtctggatgaagtcggcagtactattgaggcaattgggcaagttggacgaagccctttcg
acgttggaggttgctatcaagaaattcgcttcttttgacaagttgcacatgatccgaggg
cagatctacgagtcccgtaatgaagttgcgctcgcccgaaatgcctatgctcaaggatgc
cgatcatgtccgaaaagtatcccattatggatcttgtcagctcgcctggaagagaaggcc
ggtgtgacaattaaagcgagggcgttgctcgaaaaggcgaggttgcataatcccaagaat
gatgaattatgggcggaaagtatcaagattgaagaacgaacgggcagcacacagcaggcg
aaatctgtccttgctcgagcgatgcaagagtgtcccgcctctcctcttctttggtccatg
gcaatcttcatggaggctcctcaacaacgaaaaggtcgttctgttgacgccatcaaaaag
gccggcgagcatccagccgttatcttagcggtcgcgaggaacttttggagtgaaaggaag
attgaaaagacaagacaatggatggctaacgctatcacggccgatgaagattggggagat
gcctggggatattggctgaagtttgagaggcagcatggagagaaagaacgccaagaagcg
gtcattgaaaagtgcatcgcggcctcaccgcaccatggcccggtgtggcagtcggtatca
aaggatttggccaacgttggcaagtctacaagagagatactggagttagtcgcagacaaa
atagaataa
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