Cryptococcus deuterogattii: CNBG_1090
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Entry
CNBG_1090 CDS
T09796
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBG_1090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_1090
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CNBG_1090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
88177407
NCBI-ProteinID:
XP_062881208
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Position
3:complement(34398..36029)
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AA seq
374 aa
AA seq
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MGKLEILVCPPTLDIYVDIYIRQLLPFLDLWYHPLSSCCYTSAPDYLEVDSEKMSTTTAA
VPKATATAGTTGVGGANAAAVFKRLHPASYLSRFLSSGYRPDGRPILSSSSSQPTTSASA
SAADDIWRQVSINMGSISTAHGSALVRMGDTTMVCGVKAEIGEPDTETPGEGFVVPNIDL
PALSSPKFKPGPPGDEAQTYSNWLNELLVSSKTIPLSSLLIAPGKAAWVLYIDVVCINYD
GNAFDAAVLAVMAALKNTRLPKAVYDDDTQRTICSRTERYPLKLGRMPLSCSFGIFGSTH
LLPDPTSFETPLLPTTLTIALDQDGQAALVRQEGLGGLRKEGGGKNGKEVVDEAWELSAT
RVEVLRKALDEAEA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagctagaaatacttgtctgtccgcccaccttggacatttacgttgacatttac
attcgccaacttttgccttttctcgatctctggtaccacccactttcttcttgctgctac
accagtgcaccggactacttggaggttgacagcgagaaaatgtctacaacaacagcagca
gtaccaaaagcaacagcaacagcgggaacaactggtgtaggaggtgcaaacgcagcggca
gtcttcaaacgtcttcatcctgcttcttatctctctaggtttttgagttcgggatacagg
cctgatgggagacctatcctttcttcctcctcttcccagcccaccacctctgcctctgcc
tctgccgcggacgacatatggagacaagttagtatcaacatgggctctatatccaccgct
cacggttcggcgcttgtgaggatgggggatacgacgatggtttgcggtgtaaaagctgag
attggggagcccgatacggaaacgcctggggaggggtttgtagtacccaatattgacctc
ccagcactgagttcaccaaaattcaaacccggtcctcctggcgatgaggcgcaaacgtac
tcaaattggttaaacgagttgctcgtttcatcaaagacaatccctctgtcatcattactt
atcgcgccaggtaaagccgcttgggtactctatatcgatgtggtgtgcataaactatgat
gggaatgcgtttgatgcggctgttttggctgtgatggccgctcttaagaatacgaggtta
ccgaaagcggtatacgacgatgacactcaacggacgatttgttcgaggacggagaggtac
ccgctgaagttggggaggatgcctctgtcgtgttcgtttggaatttttggaagcactcac
ctcctcccagacccaacgtcgttcgaaaccccactgttacccaccaccctcaccatcgct
ttggaccaagatggacaagcggcgctcgttcgacaagaaggtcttggtggtttgagaaaa
gaaggaggagggaaaaatgggaaagaggtggtggatgaagcgtgggagttgagtgcgact
cgggtagaagttttgagaaaggcgttggatgaagctgaggcgtaa
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