Cryptococcus deuterogattii: CNBG_1191
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Entry
CNBG_1191 CDS
T09796
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03013
Nucleocytoplasmic transport
cdeu03015
mRNA surveillance pathway
cdeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBG_1191
09122 Translation
03013 Nucleocytoplasmic transport
CNBG_1191
03015 mRNA surveillance pathway
CNBG_1191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_1191
03041 Spliceosome [BR:
cdeu03041
]
CNBG_1191
Enzymes [BR:
cdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNBG_1191
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CNBG_1191
Spliceosome [BR:
cdeu03041
]
Complex C
Other components
EJC/TREX
CNBG_1191
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CNBG_1191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Ned1_M
CMS1
Motif
Other DBs
NCBI-GeneID:
88177509
NCBI-ProteinID:
XP_062881304
LinkDB
All DBs
Position
3:complement(328405..330484)
Genome browser
AA seq
430 aa
AA seq
DB search
MSRPDEEELVDYDEAAEEILPPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLR
AISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIII
LCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRT
MALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIR
ATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDNLEFNQVCIFVKS
VQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERV
NVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQKIQERFTVAIPTLPE
TVDPATYMTS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaccagacgaagaagaactcgttgactacgatgaggccgctgaggagatcctg
ccccccgcccccgccgccgaaaccaacggcgacaaggcggacggtgacaagaagggttct
tatgtcggtatccactccaccggtttcagggatttccttttgaagcccgagctcctccga
gccatctctgatctcggttttgaacacccctctgaggttcaacaggaatgtattccccag
gccatcctcggtacagatgttctgtgtcaagccaagtctggtatgggtaagacggctgtg
tttgtgcttgctgcgttgcaacagattgagcctgttgatggcgaggtttctatcattatt
ctctgtcacactcgagagcttgcctatcagatcaagaatgagtttactcgtttctccaag
ttcatgaccaatgtccgaactggtgtcttttacggtggtactcccatttcggccgaccag
gagattcttgccaacaaggaaaagtgccctcacattgttgttggcacccctggccgaact
atggccctcgtccgtgacaagaagctcaacgccagtaaggtcaagcactttgttcttgac
gagtgcgacaagatgctcgaacaacttgatatgcgacgagacgttcaggaaattttccga
gccacccctcaccacaagcaggttatgatgttctctgccaccctttccaaggacatccga
gctacttgcaaaaagtttatgcaaagccctcttgaaatttacgtggatgacgagaccaag
ttgactctccacggtcttcaacaattctacctcaagctcgaggagagggagaagaacagg
aagctcaacgacttgttggacaatctcgaattcaaccaggtctgcatctttgtcaagtct
gttcaacgtgctactcagctcgacgctctcttgcaagagtgcaacttcccctccatctgt
atccactctggtcttcagcaagccgaacgaatttctcgattccaacagttcaaggctttt
gagaagcgaatcctcgttgctactgacattttcggtcgaggtatcgatgttgagcgagtg
aacgttgtcatcaactatgacgctcccgcagatgccgactcttacctccaccgtgtcggt
cgtgctggtcgattcggtaccaagggtcttgccatctcctttgtctctagcgacgccgac
caagaggtcctccaaaagatccaggaacgattcaccgttgctattcccactttgcctgag
actgtcgatcccgccacttacatgacttcgtaa
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