Cryptococcus deuterogattii: CNBG_1265
Help
Entry
CNBG_1265 CDS
T09796
Name
(RefSeq) DNA topoisomerase 2-associated protein PAT1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBG_1265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_1265
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CNBG_1265
mRNA degradation factors
5'-3' decay
Decapping complex
CNBG_1265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
McyA_C
Motif
Other DBs
NCBI-GeneID:
88177629
NCBI-ProteinID:
XP_062881375
LinkDB
All DBs
Position
3
Genome browser
AA seq
668 aa
AA seq
DB search
MSAGFFGFDTALPEHRQSQHRPNDGAVASKFQSASSLPNPFNLEAPEDEEMEVYTWGQGV
DKDTEEADELNDATFGVDINAIRGGQFSFGNEESVALPAKPSKQPQAQRGPIASTASRYR
PKAVADPFAFSEDDFYASRPVKKTQSKSKTKASVEPAWTKPAGQVTSWGTAPSSTVKPSL
ASKPAQVEGPGHIKSLEEIEAEFASMPAPSAAQVAFQAPTQLSGQPPANAVVTLEELERQ
MMEDVPPSLAQHQAQHQVPSREVTPTQISGLAQSGYASQKAVLDSMFPDLGKGPGPVPPG
QQQGQTGQSPVPIGPSPEELARQEHFKKVFEAKVQAMSKYNNLMGSSDKDFITRIQLSQL
ATSDPYISDFYAQVFSAMERSRRAHESGQMDRPTVVQIAAGFGFGVGGPAGNRFGKMGQN
TMQKLSTQVKKLVESRTAHQKSANTAALQGALGRVTRGGAAAPRPVLAIPTNTKLENRPA
SHLNQSTGIQRPPLTRKQIMYALEGLYTDVLELEQFRREAPPSASVDEIEIWNAKCQVKV
DQIWAKLMVQEPIEVSNPHPFISLLNPPKGQRILGRIILQLPDQKIYTLLSLLVVKFHQL
DVVARAPPPPVTDASLLTKADRLDRAKREADTDGFLYNLVPAMDMAINKCKLGLLGGLLV
AAVQRLML
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccggattcttcggttttgacaccgcactccccgaacaccgtcaatcccagcat
cgtcccaatgacggagccgtcgcttccaaattccaaagtgccagttctctgcctaatccc
ttcaacctcgaggccccagaggatgaggaaatggaagtatacacttggggtcaaggggtg
gacaaggataccgaggaagccgatgagctgaatgatgcaacgtttggcgtggacatcaat
gccatcaggggtggacaattctcgttcgggaacgaagagtcagttgctttaccggctaag
ccatcaaaacagccccaggcgcaaagaggacccattgcttcgaccgcctcccggtaccga
cctaaagcagtggccgatccatttgccttttctgaagatgacttttatgcttctcgccct
gtcaagaagacccaatcgaagtccaagacaaaggcctcggttgaacctgcttggacaaaa
ccagctggccaggtcactagctggggaacggctccttcttctacagtaaagccatctctt
gcgtccaaacctgctcaggtggaaggtcccggacacatcaagagtctcgaggagattgag
gcagagtttgcttcaatgcctgcgcccagcgcggcgcaggttgccttccaggctcctacg
caattatcaggacagcctcctgcaaatgctgttgtaacacttgaagagcttgagaggcag
atgatggaagacgtccctccatctcttgcccaacatcaggcccagcaccaagtgccttct
cgagaggttactcccactcagatctcaggcctcgcccagtcagggtatgcgtcccagaaa
gctgtcctcgacagtatgtttcctgatcttggcaaaggtcctggccccgtacctccaggt
cagcagcaaggccaaacagggcaaagcccggtccctataggccctagtcccgaagagctc
gctcggcaggagcatttcaagaaggtttttgaagcgaaagttcaagcaatgtccaagtac
aataaccttatgggatcgtcggacaaggactttattacccgcattcaattgtctcaactc
gctacttccgacccttatatttccgacttctatgcccaagttttttctgcgatggaaaga
agccgccgggcgcatgagagtggtcagatggataggccaaccgtggtacaaattgcagca
ggttttggattcggtgtcggcggtcctgccggtaacagatttggaaaaatgggacaaaac
actatgcagaaattgtcgacacaggtcaagaaactggttgagagtaggacagcgcaccag
aaatccgccaatactgctgctcttcagggcgctctcggccgagtcacacgaggtggtgct
gctgctcctcgtcccgttcttgccatccctacaaacaccaagctcgaaaaccgtcctgcg
tctcaccttaatcaatccacaggcatacagcgcccacctctcacccgcaaacaaatcatg
tatgccctagaaggcctctacaccgacgtccttgagcttgagcagttccgtagagaagca
ccgccttcagcctctgtggatgaaatcgaaatctggaacgctaaatgtcaagtaaaggta
gatcagatctgggccaagcttatggttcaagaacctattgaagtatcaaatccccatcca
tttatatcccttctcaaccccccaaaaggtcaacgtattctcggccggatcatccttcaa
cttcctgatcagaagatttacaccttgctgtctctccttgttgtgaaattccatcaacta
gacgttgtggctcgtgcccctcctcctccagttacagacgccagcctcttaaccaaggct
gacagattagaccgcgctaagcgcgaggcggacacggatggcttcctgtacaacttggtg
cctgctatggacatggcgattaacaagtgtaagctgggccttttaggtggtctgttggtc
gctgctgtgcagagattgatgttgtga
DBGET
integrated database retrieval system
