Cryptococcus deuterogattii: CNBG_1757
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Entry
CNBG_1757 CDS
T09796
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNBG_1757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdeu03021
]
CNBG_1757
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_1757
Transcription machinery [BR:
cdeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNBG_1757
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CNBG_1757
U7-dependent histone pre-mRNA processing factors
CNBG_1757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
88178151
NCBI-ProteinID:
XP_062881832
UniProt:
A0A095C8F1
LinkDB
All DBs
Position
5:complement(799100..802679)
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AA seq
1054 aa
AA seq
DB search
MSLYADDDPTKALQLTDEQPTLQPPTDPQQALNAALALDSESPEQQEGLQNAAQRFEEHP
ERLPEVIPRLLGLITEGGDSLLRFWTLDMIALTVGRSGLMLDVKLHVAQYCLTALNKLLH
SDSVPTIKAVIPILSTIYPILFRLLATSRPSQQVLDLFNVAKSKIISFALDPNARPFNVG
IKAVAWKFVQRVLLAATRAAGSDPRLPQRGAGSNDVNVSHIVPNGCLSASDIEKEGTLLQ
TQLVTHLYSSSEPAILHPLINTLPAIAKMRPTLAPLVVHSLASWTPSALVAAGRSAMEIR
AVDKTVRIAISHLLRHPPLSAHAAQLNDALVRQKARMEAAFIGEALARKERRQNLKHTID
PETAFEAESSEQAAKRARLDGLVGVGSGMGKGPEIDVSGMRLEEVVEVVLSSLRSVSLEL
LTGTIENAKRALQENSTDAQPLLAAALGVSSIVKEEEEEEILNPLDMEDDDDDLLMDGPE
PLMEEEEPTSFTDFVLPAPEPLEPSDKEFIFSDTIERIWQTGADLASLPDPKDSDATKLA
VKPKEMWMLLLARLATRGADVKRKVICDFIIADFANRSKFASVWLNEEWYNEKIGVSSPG
QYLSNLEAIVTAYLPKVDSKDKSLSTFILTLPAIPPSLISTLETICQEPERALVGFLALR
DIVEVRPPVRPQALQTLLELCTHPDRKIRVMAIITTVRRWGNDSPMMPFLTKYALGVLWR
LANDGVKSEDVDMEEGEQADEKIQSKFLGEPNVDNVQQHVELAFALAKRKQDLLDDIFRL
YPRLEPAVQDVVEAQLMPLIQSLGATEKLLEILRKFPNGADKLVMRVVGVLSAEGSKTLV
TLMKTLLSERDLDPSFVIPIVGDLDKAEIEKQLPRIVSLLGDVNSKDMVKTAFASMLQKM
TPSDLMVALHQEGAPLKLTIEAIGICFSMTTVFRSDVLANAMSRIADLSTIPLIFVRTII
QVVTTYKSLAPFIANHILPKLVTKKIWEIPQLWDGFIMLAKRIAPASFGALLQLPKEQLK
EVVEKQPGLKSGLKGFLANKPGSKAAMAEIFGDD
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgtccctctatgctgatgatgacccgaccaaagccctccagctcacagacgagcagcca
actctccaaccgcctacggacccccagcaagccctcaatgctgctcttgctcttgattca
gagtcaccagaacaacaagaaggccttcaaaatgcggctcaaaggtttgaagaacatccg
gaaaggctgccagaggtgataccgcgtttgttgggactcatcacagagggaggagattcg
ctgttgcggttttggacgctggacatgattgctttaaccgtcggaagaagtggattaatg
ctggatgtaaaattgcatgtcgctcaatattgtttgacggcactgaataaacttcttcac
tcggactcggtaccgacgattaaggctgtcattcctatattatccaccatatatccgata
ctttttcggctacttgctacttccaggccaagtcaacaagtcttggatctgttcaatgtg
gcgaaatctaagattatctcgtttgctttggacccaaatgcgcgaccatttaatgtcggc
atcaaggctgtggcgtggaaattcgtgcaaagagtcctgttggctgctacgagagctgcc
ggatcagatcctagattaccgcaaaggggagcaggaagcaatgatgtgaatgtgtcgcac
attgtgcctaacggttgtttatctgcgtccgacattgaaaaggagggcactcttcttcag
acacaactcgtaacccatctgtactcttcttcagaacccgccattcttcatccacttata
aatacccttccggccatagcgaaaatgcggcctacccttgctccccttgttgtacattcc
ctagcgagctggacgccctctgctctagtagctgctggcagatcagcgatggaaatccga
gcagttgataaaaccgtgaggattgcgatcagtcatttgcttcgccacccccctttgtcg
gcgcacgctgcccaacttaacgacgcccttgttcgccaaaaagctaggatggaggccgct
ttcataggcgaggctttggctcgtaaagagcgccgtcaaaatctcaaacatacaattgat
cctgagactgcatttgaggccgagtcaagcgagcaagcagccaaacgggccaggttggac
ggcctggtaggtgtgggaagtggaatgggcaaaggacctgagatagatgtgagcgggatg
aggctcgaagaggtggtagaggtagtcctcagcagcttaaggagtgtgagcttggagctt
ctcactgggaccatagagaatgcaaaacgagctttgcaagaaaattctaccgatgctcag
ccgctcttggcagccgcattgggtgtcagcagtatcgtcaaggaagaagaagaagaagaa
atcttgaatccgctggatatggaggatgacgatgacgatttattgatggatggcccagaa
ccgcttatggaagaagaagaaccaacgtccttcacggatttcgttcttcctgcccctgaa
cctcttgagccgtcggacaaggagttcattttttcagatacaattgaacgaatatggcaa
acaggtgcagacctcgcgagtctccccgaccctaaagattctgatgcaacgaagttggca
gtaaagccgaaagaaatgtggatgctattactagcccggttagcaacaaggggggcagat
gtgaagaggaaggtcatctgcgatttcatcattgccgactttgctaatcgatcgaaattt
gcttcggtgtggcttaacgaagaatggtataatgaaaagatcggtgtttcctcgcctggc
caatatctgtccaacctcgaagctatcgtaactgcctacctcccaaaggttgactcaaaa
gataaatctctttcaacttttatcctgacgcttcccgcaattcctccttctctcatctcg
actctcgagacgatttgtcaagaacctgaaagggctcttgtggggtttctggctttgcga
gatattgtggaggtcaggccacccgtcagacctcaagctctacaaaccttattagagctt
tgtacacatcctgacaggaaaattcgcgtaatggcgatcatcaccaccgttcggcgatgg
ggtaatgattccccaatgatgccatttcttaccaaatatgcgctcggagttctttggcga
ctcgccaatgatggcgtcaagagcgaagacgtggatatggaggagggcgaacaagctgat
gaaaagatccagtcgaagttcttgggagaacctaatgtggacaacgtgcaacagcatgtg
gagttagctttcgctcttgcgaagcgaaagcaagatttgttagacgacatattcaggctg
tatccccgccttgagcctgcagtgcaagacgttgtggaagcacagctgatgccactgatc
caaagtctgggtgccactgaaaagcttctggagattctgcgaaagttccctaatggagcc
gacaaattggtaatgcgcgttgttggagtgctaagcgcagaaggaagcaagacgctggta
actttgatgaagacattgctaagtgaaagagatttggatccaagtttcgtgataccgatt
gtaggagatttggacaaggctgaaatcgagaaacaactccctcgaattgtgtcccttctt
ggagacgtaaattccaaagacatggtcaagactgctttcgcttcgatgcttcaaaagatg
actccatctgatctgatggtcgctttgcatcaagaaggcgcccccttgaagttgactatt
gaagctatcggcatatgtttctctatgaccacggttttccgatccgacgtacttgctaac
gccatgtctcgcattgccgatctttctactatccccctcatctttgttcgaaccattatc
caagtagtaactacctacaagtcccttgcgcccttcattgcaaatcacatcctccccaaa
ctcgttaccaaaaagatctgggagatcccccaactctgggacggcttcattatgcttgcc
aagagaattgctcctgccagttttggggctttattacagttgcctaaagaacagcttaag
gaagtggttgagaagcagccgggattgaaatcgggcctcaaaggatttttagcgaacaag
cctggtagcaaggctgcgatggctgagatctttggtgatgattga
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integrated database retrieval system
