Cryptococcus deuterogattii: CNBG_3332 Help Entry CNBG_3332         CDS       T09796                                  Name (RefSeq) ATP-dependent helicase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cdeu  Cryptococcus deuterogattii Pathway cdeu03013   Nucleocytoplasmic transport cdeu03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cdeu00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CNBG_3332    03015 mRNA surveillance pathway     CNBG_3332  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cdeu03019]     CNBG_3332 Enzymes [BR:cdeu01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CNBG_3332     5.6.2.5  RNA 5'-3' helicase      CNBG_3332 Messenger RNA biogenesis [BR:cdeu03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CNBG_3332    mRNA cycle factors     Common to processing body (P body) and stress granule      CNBG_3332 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII UvrD-helicase SLFN-g3_helicase NPHP3_N DEAD AAA_22 NAT10_TcmA_helicase nSTAND3 AAA_16 AAA_25 PhoH ATPase Ribosomal_S13_N T2SSE Motif Other DBs NCBI-GeneID:  88179623 NCBI-ProteinID:  XP_062883303 LinkDB All DBs Position 1:<1179747..>1183659 Genome browser AA seq 1094 aa AA seqDB search MEFSNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQLGDLHLGETTSGHAAVG QGYIDDFDEEIERNSFGEGVEHACSYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNH LVKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSS RDINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLED AEAQSGEEEMQPILLKYEDAYQYQNILGPLVKIEADYDKRMKESQTENDITIRWDMGLNQ KRLAWFCMPKLESGEVRLAVGDELKLKFAGTTNSVGIKGLQAFNKGGWGSSGDAVWEGVG SVVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVS GYIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGK TVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRLAAKSREALDSSVDF LSLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCV GAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARA GLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFP WPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEG QRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR MNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKK SLAAAMDPFKRRETSAVEFLSKNVGHGHGHGQSSATSRFDPAYYRTHNPLSFIPPDAQSV VSQALTSSAFPLFGGGGVGGGVGGVGGKNKTYTGYASSVISQQPMDGGNAHAHGHGDNHL PPRVAGQSQFDRFANVGGDNMMGMGMGMGIGMGKGRRLSIGSEAASASMYAYGYKAGEDD TQSIAPSQAGMTEF NT seq 3285 nt NT seq  +upstreamnt  +downstreamnt atggagttttccaactttgaaggggcatcacagtacggtccagacatcgatgacaacact tcattatactcgtcaatcccgccttcagtagtgacagcgccaactattagtggcgatatt gctagtcagctaggcgaccttcatctcggcgagactacgtcggggcatgcagcagtcggt caaggctatattgacgactttgacgaagaaatagagcgaaattcatttggagaaggggta gagcatgcttgcagctactgtggtattcataatccacaatgtgttgtaaagtgtcttcac tgtaataagtggttctgcaattcccgtggcaatacatctgcctcgcatatcgtaaaccat ttggtcaaagcgaagcacaaagaagtgattctacacaaggaaagcgcccttggggatacc atcccagaatgttacaactgtggcagtaaaaatgtgtttatgctaggatttattcccgcg aaaagtgataccgtcgttgttttactctgccgacaaccctgtgcagctctgacaagctcc cgggatatcaactgggatacttctcaatggtcagctatcattgatgatcgtcaattcctc tcctggctcgtcaaggtaccatcagaggctgagcagcttcgagcgaggcaaatttcttta gcccagatatcaaaacttgaagaactttggagagaaaatcccaatgcaaaactcgaggat gcggaggctcagtctggtgaggaggagatgcaaccgatcttgctcaaatatgaggacgcg tatcaatatcagaacattcttgggcctctagtcaagattgaagctgattatgacaagcgc atgaaagaatcacaaaccgagaatgatatcacgatacgatgggatatgggtctcaatcaa aagcgtcttgcttggttttgcatgccgaagctagaaagcggagaggtgagattggcggta ggtgacgagctgaagctcaaatttgcggggacgaccaacagcgtcgggatcaagggtctc caggcgttcaacaaagggggttggggaagttctggagatgctgtatgggagggagttggg agtgtcgtcaagataccgaacaatgcatcggacgaaatctgcttggagcttcgaaggaac gacggagtgccttttgactgcactcatggcttctctgttgactttatctggaaatcaacc agtttcgacaggatgcaggcagcgatgaaaacgtttgcgatcgacgagaagagtgtcagc ggctatatctatcataaactgctcggacacgaagttgaaccccaagtactgcgtacccaa atgcccaaacgttttgctgcacctaatcttccggagctcaaccactcgcaaatgtctgcc gtcaaggccgtattgcaaaaacctctgagtctcatccaaggccctccaggtaccggaaaa acggtgacttctgcttctatcgtgtatcacctcgccaagatgaaccctggtcaggttttg gtatgcgcgccttccaacgtagctgttgatcatctttgcgaaaagattcaccagacgggt ctcaaggtcgtacgattagcagccaaatcacgggaagcgctcgattcatcggttgacttc ctttctctccatagtcaagtagccaatgcggacacacaccacgagttgcagaaacttatc caactgagaaacgaccaaggtgaattaagtcagagcgacgaaagaaagtataaagcattg gtcaaagcgtgtgagaaggacattctgaacgcggcagatgttatttgcaccacgtgtgtc ggtgctggcgatcccaggctggccaagtttaaatttagaacagttttgatcgatgaagct actcaatctgccgagcctgaatgtatgatccctcttgttatggggtgtaagcaagctgtg cttgtaggagatcaccaacaattgggacctgttattatgaacaagaaagcagcccgagcc ggtctttcccaatcgctgtttgaacgactcgtcatcctgggcaaccaccctatccgactt caggtgcagtaccggatgcacccctgtctttccgagttttcatccaacttgttctacgag ggcactttgcagaatggtgtcacggcgccagaaaggctgcgtaagaatgtagatttcccc tggccagttgcggacactcccatgttcttccatcagaaccttggtacggaggaaatatca tccagcggaacatctttcctcaacagaaccgaagcatccaatgttgaaaagatggtgacc aagtttttcaagtctggtgtcttgcccaatcaaattggtgtcattacgccttatgaagga cagcgatcatatattgcgtcgtacatgcagctgcacggctcgctgaaaaaggatctgtac aaagaggtcgaggtagcgagtgtggatgcgttccagggacgtgagaaggattatatcatt ttgagttgtgtgaggagcaatgagcaccagggtattggatttttaaatgatcctagaagg atgaacgtggctcttacccgtgccaagtacggcgtggtgatattgggtaatccaaaggtg ttgagtaagcaccctctttggctttacctcctttcccactacaaggagaagggatgcttt gttgaaggtcctctcagtaaccttcagccgagtatggtccagttcagccgaccgaaaaaa tctttagcggcggctatggaccctttcaagagacgtgaaacttctgctgttgaatttctc agcaagaatgtcggccatggacatggccacggacaatcatccgccacgagccgtttcgac cctgcgtattaccgcacccataaccctctttcatttatcccgcctgatgcccagtcggtt gtcagccaagcattgaccagctctgctttcccgttattcggcggtggtggggttgggggt ggggttgggggtgttggtgggaagaacaagacgtatacgggttacgcatcaagtgttatc tctcaacaacccatggacggcggaaacgcccacgcccacggccacggcgataaccattta cctcctagggtagcaggccaatcacaatttgacaggtttgccaatgttggtggggacaac atgatgggaatggggatgggaatggggatagggatggggaaggggagacggctttcgatc gggagcgaggcggcaagcgcgtcgatgtatgcgtacggttacaaggcgggcgaagatgat acgcagagtatcgcaccaagccaagctggaatgaccgagttttaa

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