KEGG   Cryptococcus deuterogattii: CNBG_3888
Entry
CNBG_3888         CDS       T09796                                 
Name
(RefSeq) ATP-dependent RNA helicase FAL1
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
cdeu  Cryptococcus deuterogattii
Pathway
cdeu03013  Nucleocytoplasmic transport
cdeu03015  mRNA surveillance pathway
cdeu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cdeu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CNBG_3888
  09122 Translation
   03013 Nucleocytoplasmic transport
    CNBG_3888
   03015 mRNA surveillance pathway
    CNBG_3888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cdeu03019]
    CNBG_3888
   03041 Spliceosome [BR:cdeu03041]
    CNBG_3888
   03009 Ribosome biogenesis [BR:cdeu03009]
    CNBG_3888
   03012 Translation factors [BR:cdeu03012]
    CNBG_3888
Enzymes [BR:cdeu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CNBG_3888
Messenger RNA biogenesis [BR:cdeu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CNBG_3888
   mRNA cycle factors
    Stress granule specific factors
     CNBG_3888
Spliceosome [BR:cdeu03041]
 Complex C
  Other components
   EJC/TREX
    CNBG_3888
Ribosome biogenesis [BR:cdeu03009]
 Eukaryotic type
  90S particles
   Helicases
    CNBG_3888
Translation factors [BR:cdeu03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CNBG_3888
SSDB
Motif
Pfam: Helicase_C DEAD Cas3-like_C_2
Other DBs
NCBI-GeneID: 88180136
NCBI-ProteinID: XP_062884079
LinkDB
Position
11:complement(243851..245645)
AA seq 316 aa
MLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEA
GQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVV
VVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL
TITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTD
VWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDIEQY
YSTQIDEMPMNVAELT
NT seq 951 nt   +upstreamnt  +downstreamnt
atgcttcagtccatcgataccaacttgcgggagacccaagccttggtcctctccccaacc
agagaattggctgtgcagatccaaaccgttgtcctcgctctcggtgactacatgaacgtc
tcttgccatgcttgtattggaggaaccagcgttggtgaagatattaggaagcttgaggcc
gggcaacaggttgtcagtggtactcctggccgagtgtttgacatgatccgaaggagaaac
ttgaggaccaaggacattaagatgctcattcttgatgaatctgacgaactcctcaacaag
ggtttcaaggaccaaatttacgacatctaccgataccttcctcccgccacccaggtcgtt
gttgtctccgctaccctccctcatgatgtcctcgaaatgactaccaagttcatgaccgac
cctgtccgaatcctcgtaaagcgtgatgaattgacccttgaaggaatcaagcaattcttc
gtcgccgtcgaaaaggaagactggaagtttgacacgctttgtgatttgtatgacactttg
accattacgcaagcggtcattttctgtaacacccgacgcaaggtcgactggttgacagaa
aagatgcgagaggcgaactttactgtcagcagtatgcacggagaaatggtacaaaaggaa
cgagatgcgatcatggccgaattccgaggtggacagagtcgagtattaattaccacggac
gtctgggctcgaggtatcgacgtccagcaagtttctttagtcattaattatgacctccct
acttctcgtgaaaactatttgcaccgaataggtcgaagtggtcgattcggcaggaaaggt
gtggcgatcaacttcgtcaccgtcgatgatgtcaggattttgagagatattgagcagtat
tactctactcaaatcgacgaaatgcctatgaatgttgcggagctcacataa

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