Cryptococcus deuterogattii: CNBG_3899
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Entry
CNBG_3899 CDS
T09796
Name
(RefSeq) ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBG_3899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_3899
03036 Chromosome and associated proteins [BR:
cdeu03036
]
CNBG_3899
Enzymes [BR:
cdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNBG_3899
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CNBG_3899
mRNA degradation factors
5'-3' decay
Decapping complex
CNBG_3899
Chromosome and associated proteins [BR:
cdeu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CNBG_3899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
88180147
NCBI-ProteinID:
XP_062884090
UniProt:
A0A095CDG4
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All DBs
Position
11:214947..217130
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AA seq
615 aa
AA seq
DB search
MASSSTLPNDDWKQGLTAPPKDLRPQTEDVTATQGSRFEDFGLRRELLMGIYTAGFERPS
PIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQT
SQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKGIAGLNKC
SIFVMDEADKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVKEFKDQHMVQPYEINL
MDELTLKGVTQYYAYVEESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTELGYS
CFYSHAKMQQAHRNRVFHDFRNGMTRNLVCSDLLTRGIDIQAVNVVINFDFPRTAESYLH
RIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLYVAPAMVEEERE
SPPPRPAAIAAPPAQQQSQQRHRQHPPVPSHQTAQYTPDAAPVQQQQQQQQQSPQYQQAY
GQIPPQPQAPFQQQSNSSSVPAPLPSYPQQNPTQAQGPPQVQSPPSVPGIQPMVPAQNPP
QGQIPPTQPRAQQQGQQQPGQPGQAQGQGQLNRRPNNGGVRGNARGQGQRGRGRGRGGQV
GQPSAGVGQSQQAQA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcctcaacgttgccgaatgacgactggaaacagggccttactgcccctcct
aaagatcttcgtccccaaactgaggacgttaccgctactcaaggatctcgtttcgaagat
tttggcttacgccgagaacttttgatgggtatctacactgctggttttgaaaggcctagt
cctatccaagagcaggctattcctatggcccttacaggacgagatattcttgctcgagcg
aagaacggtactggaaagactgcttcttttatcattcctacccttaaccgaattaacact
tctttatctcatatccaagcacttatccttgttcccacccgagaactcgcccttcaaaca
tctcaagtctgcaaaacccttggtgcccacattcctaatctccaagtcatgattaccact
ggtggtaccacattacgtgacgatatccttcgtcttcaacagcctgtccacattctcgtc
ggtacacctggtcgtatcttagatttgggaagcaaaggaattgcgggtttgaacaagtgc
agtatcttcgtcatggatgaagcagacaagcttctcagtgaagatttcatgcctgtcatt
gagcagactttagccctgtgccctcaggagagacaggttatgctgttctctgcaactttc
ccatggaccgtcaaggaattcaaggaccaacacatggttcaaccatacgaaatcaacctc
atggacgaacttactcttaaaggtgtcactcaatattacgcctatgttgaagaatctcag
aaagttcattgccttaacaccctcttttccaagcttcaaatcaaccaatctatcatcttt
tgtaactccaccaatcgtgtcgagctcctcgccaaaaaggtcactgaacttggctactct
tgtttttactcccacgcaaagatgcagcaagcccacagaaaccgagttttccacgacttc
cgtaacggcatgactcgaaacttggtctgttccgacttgttgacaagaggtattgatatc
caggccgtaaatgttgtcatcaactttgacttcccaaggactgccgaatcatatcttcac
agaattggtcgatcgggtcgttttggtcacttgggtcttgccatttctcttctcactctt
gaagatagacataatttataccgtatcgaatccgaacttggcacagaaattgcccctatt
cccgctgtcatcgatcctgttctctatgtcgctcccgccatggtggaggaagaacgagaa
tcaccgcctcctaggcccgctgccatcgccgctcctcccgctcagcaacaatctcaacaa
cgacatcgacaacaccctcctgtgccttcccaccaaactgctcagtacacccctgatgcc
gcacccgttcagcagcaacaacaacaacaacaacaatcgcctcaataccaacaggcatat
ggccagatcccaccccaacctcaagctcctttccaacagcagtccaactcttcttccgtc
cccgctcctttgccttcttatccccaacagaatccgacccaggcccagggtcccccgcaa
gtacaatccccgccttctgtgcctggtatccagcccatggtccctgctcaaaacccccct
caaggccaaatccctccgactcagcctcgagctcagcaacaaggccaacaacaacccggt
caaccaggccaagcacagggtcaggggcaacttaacagacggccgaataatggtggcgtt
aggggtaacgctcgaggtcaaggacagagaggacgaggtagggggagaggtggacaggtc
ggtcagcctagtgccggtgtgggccagagccaacaggctcaagcctaa
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