Cryptococcus deuterogattii: CNBG_3909
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Entry
CNBG_3909 CDS
T09796
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNBG_3909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdeu03021
]
CNBG_3909
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_3909
Transcription machinery [BR:
cdeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CNBG_3909
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CNBG_3909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf-CCCH_4
zf-CCCH_2
zf_CCCH_4
zf-CCCH_3
zf-CCCH_9
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
88180153
NCBI-ProteinID:
XP_062884096
LinkDB
All DBs
Position
11:complement(<176251..>178357)
Genome browser
AA seq
648 aa
AA seq
DB search
MSASAKPIPRSRPTPVATAGSPEKTSGTPASYKYYRPGAATSIDKSFNNDNWRDRSPAPT
SAMPATFSGKGPERTVGFEKRDVSSLKSNGGSALSREREKEENKEKESEKDKEGKEKSAL
GHVPCRFFKAGACTAGESCPFSHAAPDSAKREVCQWFLKGNCKFGHKCALAHVRPGEPMS
MDRKNKKAAQLEARERSGEVTTSGTRKATPTAIPSALEESGASPVPIRSALSSSIQSNPT
RIGSSPMREPFGPPSGALPNSPANGFAHSYTRGHPAFASSPNRPSPLSASFGAVGSGLAA
GSVPGPFSLKQGSNLLSSLRPPVSATPTFSSSFSHSSLAIERPSNAVATPLSASFAGEAP
ALHRSIWARSDQPAEPLSPRRPIPRTIKPEAVFEDDDDHGEEFLPSSLSDLLTPQERARR
MSHRDSQDSSYSPSLAGYAAQAPIWGGERLAQSAGPTMGQKGFLQSLWSADGEDVRKFQP
TQPSSAQPQKQDFAFGPATAQASGPRTSLLTQQRSPDSASPTSPVRLSSFNPSAVGPGEP
FLIRNLGDPGSPSARALIEHAPGQSLPGGLANALSRLHLHGPRSTSSLAAINSGSGRAVG
GLGAEWRLAEHEAEGSEDGDGGLTPPNGLGALHSKREEHDEGLFAMDG
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgtctgcaaagcctatcccccgctcacggcccactcctgttgccaccgccggc
tcgcctgaaaagaccagcggtacccctgcttcatacaagtattatcgacctggcgcagcg
acttctattgacaagtccttcaacaacgacaactggcgcgatcgatcgcccgcacctact
tccgccatgcccgctactttcagtgggaagggccctgagaggacagtgggatttgaaaag
agggatgttagctctttgaagagcaacggaggtagcgcgctgagtagagagagagaaaaa
gaggagaacaaggaaaaggaaagtgagaaggacaaggagggcaaggagaaatctgccttg
ggccatgttccatgtcgatttttcaaggccggcgcttgtaccgctggagaaagttgtcca
ttctctcacgctgctccggattccgcaaagcgagaggtatgccagtggttcctgaagggc
aactgcaaatttggacacaagtgtgctcttgcccacgttcgacctggcgagccgatgtca
atggatcgaaaaaacaagaaagcagcgcagctcgaggcacgagaacgaagtggtgaggtc
actaccagcgggaccaggaaagccactcccactgctatccccagcgctcttgaagagtct
ggcgccagccctgtccctatccgatccgctctttcctcctcaatccaatcgaatcctact
cgtattggatcttctcccatgcgagagccttttggtcctccctctggggctttgccaaac
agtcctgctaatggctttgcgcactcttatactcgaggtcacccagcatttgcttcttcg
cccaaccggccttctcctctttctgcaagttttggtgctgtaggcagtggactagctgcc
gggagcgttcctggacctttctcccttaagcagggttcaaacctcctttcctctcttcga
ccaccagtctccgctactcccacattctcctcttcattctctcattcatcattggctatt
gagcgtccctccaacgctgttgctacacctctttccgcgtcttttgctggagaagctcct
gcgttgcaccgctccatttgggctcgttccgaccaacctgctgaacctctgtctcctcgt
cgaccgatcccgcgaacaatcaagcccgaagccgtgtttgaagatgatgatgaccacgga
gaagagttccttccttcttctctgtcagatctactcactccgcaagaacgtgcccgccgt
atgtctcaccgagacagtcaagactcttcatactctccttccctcgctggatacgctgct
caagctcccatatgggggggcgagcgtcttgcacagagtgcaggccctaccatgggacaa
aagggattcttgcagtctctctggtctgcagatggtgaagatgtccgcaaattccaacct
actcaaccctccagtgcccagccgcaaaagcaagactttgcctttggtcccgctaccgcc
caagcttccggccctcgcacttcgttgctcacccaacaacgatctcccgactccgcctcc
ccaaccagtcctgtccgcttatcttccttcaacccctccgcggttggtcctggcgagcca
ttcttgattcgtaacctcggcgatccgggatccccttccgcccgcgcactgatcgaacat
gctcccggccaatccttacctggcggtttggctaatgccttgtcgaggctacacctccac
ggaccccgatcgacgagctcgttggcggcgatcaattccgggagcgggagggcagttggg
gggctcggtgcagagtggaggttggctgagcatgaggcggaaggaagtgaagatggcgat
ggaggcctaacgccgcctaatggcctgggggcattgcattccaagagggaagaacatgat
gaggggctgtttgcgatggacgggtaa
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integrated database retrieval system
