Cryptococcus deuterogattii: CNBG_4015
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Entry
CNBG_4015 CDS
T09796
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CNBG_4015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cdeu03041
]
CNBG_4015
Enzymes [BR:
cdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNBG_4015
Spliceosome [BR:
cdeu03041
]
Complex C
Other components
Step II factors
CNBG_4015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Cas3-like_C_2
AAA_30
ATPase
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
88180256
NCBI-ProteinID:
XP_062883708
LinkDB
All DBs
Position
6:complement(698597..703717)
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AA seq
1320 aa
AA seq
DB search
MSARSPRGATTEDEFSHQIAIEMSRIMNQVNPNDLLGKRIVDIAKGNRTGDAFLRAVSTF
GQFPRDPMLSLHTRILAHLSVLQAQNQSGARRGSGHSPPRMLGGRPAGEQVEGMDHDDTD
TLAPEPVRKGGLRRAGNAPTFKTPATARPSLLGLDKLAAEKRAAAAATADKNGPPSKKAR
KDEGQDDDEQSGGVFKVPAIPVRRDNVRVRPEETPSRGSGLSEEARARLEARRRERNKPS
TGITASTADREHSREGLGDFQRRANRDRRDERGGGRESGQEEYGRDSRGGRNDWDRRQDG
RDGKPWNAASTPRTSRADRDFDGGSARIPNRGWDETPRGSRGPGGWGKGERTSRGWDQTP
RSARESPEQDGLDLNAKEWEEEQVKLDRDWYSYDDEGAVAADEDHNPFSQWENLERAKEE
ELQAKAVKRQTARQAQFNADNDLWETNRMQTSGVLQRGGVDDDFDDDSDSKVHVLVHDLK
PPFLDGTVAYTKQLDPINPVKDGTSDMAIFAKKGSVLVRERRERQEREKAAAKAASIAGT
TLGNLMGVKDEPDLGEEGQKDGVTENYKADSQFSSHLKKSEGVSNFAKTRTLKEQREYLP
AFAVREELMGMIRDHQVLVVIGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAMSV
AKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIILDE
AHERSLSTDILMGLLRKSGRIHLPSEPPSVLTYCLVLTRRRDLKLIVTSATMNAEKFSQF
FGNAATYTIPGRTFPVEIFHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIEC
CCQVIEERLSQLDEPPPLAVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVD
GILYVVDAGYSKLKVYNPKVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYL
NELFASNIPEIQRTNLANTVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDN
VGNLTSVGRKMSDFPMEPSLAKMLIVSVDYKCSSEMLTIVSMLSVPSVFYRPPQRAEESD
AAREKFFVPESDHLTLLHVYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQLEDIMKQQ
KMDLLSVGTDWDIVRKCITAGYFHQAARVKGVGEYMNIRTGLPCVLHPTSALYGLGYMPD
YVVYHELVLTSKQYMMCVTSVDPYWLADLGSVFFSIREKNFDALARARANRDFSKKTEME
AEMARQREEMERAKAEKIKKEAVAKTPRIGGIGVAYTPKSAGIGAGARSSATPRRRAGGI
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccaggtcaccaagaggtgcaacaaccgaagatgaattttcacaccaaattgcc
atcgagatgtcccgaatcatgaaccaggtcaacccaaatgacctccttggtaaacgaata
gtggatatcgcaaaaggcaaccgtactggcgatgcattccttagggccgtttcaacattt
ggccagtttcctagggaccctatgctatctctccacactcgtattctcgcccacctttca
gttctgcaagctcaaaaccagtccggcgctcgtagaggatctggacattccccacctaga
atgcttggtggtcgacctgccggagaacaggtggagggcatggatcatgacgacaccgat
acattagcacccgagcctgtcaggaaaggtggcttaagaagggccggtaatgcaccgact
ttcaagactcccgctacagctagaccgtcattactgggtctggacaagttagccgctgag
aaacgtgcagcagcggccgccacagcggacaaaaacggcccgccgtctaaaaaggctcga
aaagatgaaggacaagatgatgacgaacaatcaggtggtgtcttcaaagtgcccgccatt
ccggttcgaagggataatgtccgagtgcgacctgaggaaacacccagtcgaggatctggc
ctctcagaagaggctcgcgctcggcttgaagctcggcgtagggaacgcaacaagcctagt
acgggcattactgcgagtactgccgatcgcgaacattcaagagagggccttggggatttc
cagaggagggcgaatagggacagacgggatgaacgaggtggaggcagagagtcaggacag
gaggaatacggcagagatagtcgaggagggcggaatgactgggacagaagacaagatggt
agagacggcaaaccgtggaatgcagcatcgacgccacgcacctctcgtgcagacagagac
tttgatggcggtagcgcgcgtatccccaatcgaggctgggatgaaacaccacgtgggtca
cgcggtcctggcgggtggggcaagggagagcgcacatccaggggttgggatcaaactccg
agatcggctagagagtcaccggaacaggatgggttggatcttaacgctaaagaatgggag
gaagagcaagtcaagctggatcgagactggtatagttacgatgatgaaggggcagtggct
gcggatgaagatcataatccattctcacaatgggagaatttagaaagagcaaaggaggaa
gaactgcaagccaaagctgtcaaacgccaaactgcccgtcaagctcaatttaatgcggat
aatgacctttgggaaactaaccgaatgcaaacatccggtgttctccaaagaggaggcgtt
gacgacgactttgacgatgactctgattccaaagtccatgttttggtgcatgacctcaaa
cctccctttctggatggtactgtggcatatacaaaacaacttgatcccatcaatcctgtc
aaggatggcacaagtgacatggctatctttgctaagaaaggaagtgttttggtgagggaa
aggagggaaaggcaggagagggaaaaggcagcggcaaaggcggcgtcaatcgcaggtacc
accctaggtaatcttatgggtgtcaaggatgaaccagatctcggtgaagagggtcagaaa
gatggcgtgacagagaattacaaagctgattcgcaattttcgagtcatctcaagaaatct
gaaggtgtttcgaactttgcaaagactcgtaccttgaaagagcagcgagaatatttgccg
gcttttgcggtacgagaagagctaatgggaatgatacgagatcaccaagtgcttgtcgtc
atcggagagaccgggtcaggcaaaacaactcagctgggacaatttttgtatgaggacggg
tactgcgcgaacggaatgattggttgtacccaaccacgtcgtgtagctgccatgtctgtg
gccaagcgtgtcagcgaggaaatggagtgtaccctaggagaaactgttggctacgctatc
cgtttcgaagactgtacatccaaagataccaaaattaagttcatgacagatggtgtcttg
cttcgagagtcattgaacgaaggcgatttggatcgatatagtgtgatcatccttgacgaa
gcacacgagcgatcgctgagtacagatatcctgatgggtcttttgcgaaaaagtgggaga
atacatttaccttctgagccgccgtcagtactgacttattgtctagttctcacccgccga
cgcgatctcaaactcattgttacctcagccaccatgaacgcggaaaagttctctcaattt
tttggtaacgccgccacttatactattcctggtcgtaccttccccgtggagatcttccat
tctaaatcaccttgcgaagattacgttgatagcgccattaagcaagttctccaaatccat
ctgtcaagttcgcaaggagatattttggttttcatgacaggtcaagaggatatcgaatgt
tgctgtcaagtcattgaagaacgactgtctcaacttgatgaacccccgcctttggctgtg
ctgccaatctactctcaaatgccagcggacttacaagccaaaatcttccagccgacccca
gatggtcgacgtaaggtcgttgttgctaccaacatcgcggagacttcgctcacagttgat
ggtatcctttatgttgtcgacgccggatactcgaagctcaaggtatacaaccctaaggtc
ggaatggatgctttgcagatcacgcccatcagtcaagcgaactgtggtcaacgtgctggt
cgtgccggtcgtacaggtccgggtttctgttaccggctgtacactgagacagcatatctc
aacgagctgtttgctagcaacatccctgaaatccagaggaccaatttggcaaacaccgtt
ctacttcttaagtcgttgggtgtcaagaatctactcgagtttgattttatggaccctcct
cctcaggaaaacattcttaactccatgtaccagctctgggtacttggcgctctagacaac
gtgggcaatttgacctctgttggtcgcaaaatgtccgacttcccaatggaaccatccctc
gccaagatgctcattgtctccgttgactacaaatgttcctctgagatgctcaccatcgtg
tcaatgctgtccgtgccatcagtgttttacagacctcctcaaagagcagaggagagtgac
gctgccagggaaaagttctttgtgcctgaaagcgaccatttgacactcttacatgtttac
actcagtggaagagcaatgggtacagtgattcttggtgcatgaaacatttcctgcacccg
aagctcatgaggaaggcccgtgaggtgcgaggacagttggaggatattatgaaacagcaa
aagatggatcttttgtctgttggaacagattgggatattgttagaaaatgtatcactgct
ggctacttccatcaagcggcgagagttaaaggcgttggggagtacatgaacattcgaaca
gggttgccttgtgttcttcatcctacttccgcattgtatggtcttggttatatgcctgat
tatgttgtgtatcacgagcttgtattaacgtccaaacaatacatgatgtgtgtaacctcg
gtggatccgtattggcttgccgatctcggtagcgtcttcttttcaattagagagaaaaac
ttcgatgctttggctcgcgcacgagcgaatagagactttagtaagaaaacagagatggaa
gctgagatggccagacagcgagaagagatggaacgagcgaaagctgagaagatcaagaag
gaagctgtggcaaagactcccagaattggcgggattggagtagcatatacaccgaaaagt
gcaggtatcggtgcgggcgcgaggtcatctgcgacaccgagaagacgagcaggaggcatt
taa
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