Cryptococcus deuterogattii: CNBG_5969
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Entry
CNBG_5969 CDS
T09796
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNBG_5969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_5969
03041 Spliceosome [BR:
cdeu03041
]
CNBG_5969
03009 Ribosome biogenesis [BR:
cdeu03009
]
CNBG_5969
03016 Transfer RNA biogenesis [BR:
cdeu03016
]
CNBG_5969
Enzymes [BR:
cdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNBG_5969
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CNBG_5969
Spliceosome [BR:
cdeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CNBG_5969
Complex C
U4/U6.U5 tri-SnRNP related factors
CNBG_5969
Ribosome biogenesis [BR:
cdeu03009
]
Eukaryotic type
Pre-60S particles
Helicases
CNBG_5969
Transfer RNA biogenesis [BR:
cdeu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CNBG_5969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
88182080
NCBI-ProteinID:
XP_062885757
LinkDB
All DBs
Position
9:complement(377440..381154)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSSSAPSDSPLPASNLGVKQKKRSSKDKSGTPSPRPSKAARLDQEDGADDHMDVLEKGKD
GQPRDPMEALEEVAMPKVEDEYEVQAEREVDAAKDFADVTAPGQEAKLKLVHQVRHQVAI
PPDYPYIPINQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFA
IATCLKEGRRVVYTSPIKALSNQKFREFTETFGDVGLMTGDVTINPEASCLVMTTEILRS
MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNSMEFAE
WICATHQQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDEKSNFRDDNFQKAMAALAQGQ
GEDPANPSSGKGKKGKTKKGGALKGETSDIYKIVQLIMRRNLNPVIIFAFSKRECEDLAM
QMQKFDFNTPDEAATVAQVFESAIGSLSEDDKKLSQIEGILPLLKRGIGIHHGGLLPILK
EVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFDGKDFRNLSGGEYIQMSGRA
GRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGVSPEYM
LERCFFQFQNSMSVPVLEKQLKEAEAERDAIVIEREDEIEEYYDLRQQLKERGQDFQAVI
THPAYCLRFLQAGRLVEIRDGDKDFGWGVVVAFNKVVNQRGRPPIWTDQDPPQKQYIVDV
LTRIESGASIPRDRSVSEISPPSGADKGEVAIVACSLSTVQSISQYRVNLPKDLRGQQEK
NTAFRAVNEIKKRMPDGPPLLDPIKSMGISDKSFVDLVKKIALLENRLQSLEITKSPELP
RLYDLYDRKQKSIQSVKSLKRRINSVHDILQLEELKSRKRVLRRLGFTTADDVVEMKGRV
ACEISTGDELMLTEMMFGGTFNTLAPEQCAALLSCFVFQEKSEAKVRLKEELAAPLRTLQ
ETAKGIAKVSNESGIAIVEDEYVQSFKVEMMDVVLQWCKGAKFSQICEMTDVFEGSIIRC
FRRLQELIRQMGQAAHAIGNTELEEKFAKSMELLERPNTVVFNPSLYL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctccgccccaagcgactcgcccctcccggctagtaaccttggcgtgaaacaa
aaaaagagatcctcaaaagataagagcggtactccatcccctcggcccagcaaggccgct
cgtctcgatcaagaggatggcgcagacgatcatatggacgtattggagaaagggaaggat
ggacaaccgagagatcccatggaagcgttagaagaggtagcaatgcccaaagtcgaagat
gagtacgaagttcaagctgaaagagaggtggacgctgcaaaggactttgccgatgttact
gctccaggacaggaggccaagttgaagcttgtacaccaggtccgacaccaggttgctatt
cctcctgattatccctacatccctatcaatcaacacaagcgcaaagatccgccagcccgt
acctacaaatttgagttggatcctttccagtttgtgtctacttcctgtattgagagaaat
gagtctgtccttgtatccgcccacacttcggctggtaagacggtggtggctgagtttgct
attgcgacgtgtttgaaggaagggaggcgagtagtatatacaagtcctatcaaggctttg
tcgaaccaaaaattcagagaatttacagagacattcggtgatgttggactcatgaccggt
gatgtgactatcaacccggaagcgtcatgtctggttatgaccactgaaattttgcgctct
atgctgtaccgcggttcagaagtcatgcgtgaggttgcttgggtcatttttgacgaggtt
cattacatgcgagacaaggaacgtggtgtcgtctgggaagagaccatcattcttcttccg
cattccgtccgctacgtcttcctctcagccaccatccccaactctatggaatttgcagaa
tggatctgcgcaacgcaccaacagccttgccatgtcgtttataccgatttccgaccgact
cccctccagcactaccttttcccagctgggtcagagggcatatatctcgtggtagatgag
aagagcaacttcagggacgacaatttccaaaaagcaatggcagccttagcgcagggtcaa
ggagaagatccggccaatcctagtagcggaaagggcaagaagggcaagaccaagaaaggc
ggcgcattaaagggcgagacatccgacatttataaaattgttcaactcatcatgcgacgt
aacctcaatcccgtcatcattttcgcgttttcaaaacgtgaatgtgaagatcttgcaatg
caaatgcagaaattcgatttcaacacaccagatgaagcggctaccgtcgcacaggtgttt
gaaagcgcaatcggttccttatcagaggacgacaaaaagctttcgcaaatcgagggcata
ttgcctttgcttaagaggggcattggaattcaccatggcggattgttgcctattcttaag
gaagtgatagagattctgttccaggaaggtctgataaaagctttgttcgcgactgagacc
ttttcgatcggtttaaacatgcccgccaagactgtcgtattcacgagtgttcgcaaattt
gatggtaaagatttcagaaacctttctggcggtgaatatatccagatgtctggacgtgcc
ggtcgtcgtggtctcgatgcgcggggtatcgtcatcatgatgtgtgatgaaaagattgaa
cccgaggcagcgaaaggcatggttaagggccaagcggaccgtttggattcagctttccat
cttggatacaacatgatcattaatttgatgagagttgaaggtgtcagtcccgagtacatg
ctggaaagatgtttcttccagttccagaattctatgagtgtaccagttttggagaaacag
ttgaaagaggctgaggccgagagggacgccatcgtgattgagcgcgaagatgaaatcgaa
gagtactacgatctccgacaacaactcaaagagcgtgggcaagatttccaggctgtcatc
acacaccctgcgtactgtctacgtttccttcaggctggtaggctcgtagaaatccgcgac
ggcgacaaggatttcggctggggtgttgtcgttgcgttcaataaagtcgtgaatcaaaga
ggtcgacccccgatttggaccgaccaggatccgcctcagaagcagtatattgttgacgtg
cttactcgtattgaatcaggagcatccatccctcgagaccgatcggtctctgaaatttcc
cccccttctggtgcggacaagggcgaggttgccatcgttgcatgttctctctctactgtt
cagtccatcagtcaataccgagtcaaccttccaaaagacttgcgcggtcagcaagagaag
aacaccgccttcagggcagtcaatgagatcaagaagcgtatgccagatggaccgcctttg
ctcgacccaataaagagtatgggcatttcagacaaatcatttgtcgatttagtcaagaag
attgcactactggaaaaccgattacagtctctggaaatcacaaaatctcctgagcttcca
cgtctctatgacctctacgaccgaaaacaaaagagcatccagtctgtcaaatccttaaaa
cgccgcattaattctgtgcatgatatccttcaattggaagagctcaagtctcgtaaacga
gtactgagaaggttgggtttcacaactgccgatgacgtggtggagatgaaggggcgtgtg
gcgtgcgagatttccacgggagatgagttgatgttgaccgagatgatgtttggaggcaca
tttaatacactagcacccgagcagtgtgcggcattgctgagctgtttcgtcttccaagaa
aaatctgaggcaaaggtgaggttaaaggaggaactcgctgccccgcttcgcactctgcaa
gagacagccaagggaatagccaaggtgtcaaacgaatcaggcattgcgattgttgaagat
gagtatgtgcaaagcttcaaggtggaaatgatggatgtggttttgcaatggtgcaaaggt
gccaaattctcccagatctgtgaaatgaccgacgtctttgaagggtccattatacgatgc
tttagacgattacaagaactcattcggcaaatgggacaagctgcacatgcgatcggtaac
acggagctggaagaaaagtttgcaaagagcatggagcttcttgaaagacccaacactgtc
gttttcaacccttcattgtacctgtaa
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integrated database retrieval system
