Cryptococcus deuterogattii: CNBG_9576
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Entry
CNBG_9576 CDS
T09796
Name
(RefSeq) mRNA cleavage and polyadenylation factor Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cdeu
Cryptococcus deuterogattii
Pathway
cdeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cdeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CNBG_9576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdeu03019
]
CNBG_9576
Enzymes [BR:
cdeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
CNBG_9576
Messenger RNA biogenesis [BR:
cdeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CNBG_9576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clp1
CLP1_P
CLP1_N
AAA_16
AAA_28
Dynamin_N
TrAA12
ATPase_2
Arf
SRPRB
AAA_24
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
88182807
NCBI-ProteinID:
XP_062886040
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All DBs
Position
6:complement(248784..250498)
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AA seq
517 aa
AA seq
DB search
MQTLSSDSVFINSQELTPSAWYPIYRHTKSALYAPTTARVQVTNLPASQYTSTSTVQPQL
LNLHLAMERQRILSKRGLEQRGPRVMIMGPQSSGKTTVMKNLVNLALGTGMGWTPGVIGL
DPSSPPNLIPGSLSISTPSHPIPTHHLAHPLGSPPASTAANTVSGDVETASWWLGALEPT
NKNAEVWRVLVEHMAEAWRMRCEKDRNASISGLFLDTPAAFTVPTLGTKKDDPKARYTLV
SHAIQAFDIDTIIVIGHEKLHIDLSRLPLVQSRQLNVIRIPKSGGAVDLDDHDRETAHLF
QVRTYFYGEPPLPPQISSLVGKMVSLDFELSPYSFQIPWSRLVVLRVGEENSAPSSALPL
GSSKVLSPLRLTRVDPSGPGHVVRLLNRVLALVDVKPEDRIASAKEPEVKEEVKEEKNEK
DGEAKQEDGEGEKIGQGEGEGDGDGEGEAEGEVEGEGEDDQEEVPFREEIGTREVLGFIV
ITAIDTFARKYTVLSPTPGRLPTTVAIAGAIEWVDSA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcagactctctcttccgattcagtttttatcaactcccaagaacttactccttcggcc
tggtatccgatctaccggcacacaaaatccgccctctatgccccaactactgccagagta
caggtgacaaacctcccggcatcccaatatacatccacatccaccgttcaaccgcagctg
ctgaatctccatttggcaatggagcgccagcggatactgtcaaagcgaggattggagcag
cgggggcctcgggtgatgatcatgggccctcaaagttcaggaaagacaacagtcatgaag
aacttagtcaatttggccttagggaccggtatgggctggacacctggtgtgattggcctg
gatccgtcaagtcctcctaacctcatcccgggaagtttgtccatctcgacaccatcacat
ccgatccccacccatcatttggcccatcccttgggctcaccgcctgcttctactgcggcc
aatactgtctccggagatgtagaaacggccagttggtggcttggagctcttgaaccgaca
aacaagaatgccgaagtatggcgggttctggttgagcacatggcagaagcttggcgaatg
agatgcgaaaaggacaggaacgccagcatctctggcctcttcctcgatacccctgccgca
ttcacggtccccactctcggcaccaagaaagacgaccctaaagctcgatatactttggtc
agtcatgctatccaggcgtttgatattgacaccatcatcgtcattggccacgaaaagcta
catatcgatctctcccgtcttcctctagtacaatcacggcaactcaacgtgatccgtatc
cccaaatcaggcggcgctgtcgaccttgatgatcacgatcgcgagactgctcatctcttc
caagtccgaacctatttttatggtgaaccgccactcccgccacaaatctccagcctcgta
gggaagatggtgtctctcgatttcgagttatcgccatactcattccagattccatggagc
aggcttgttgtccttcgtgtcggagaagaaaactcggccccgtcgtccgccctgccgctt
ggttccagtaaggtactgtcacctttaagattgactagggtggatcccagtggacccgga
catgtggtaaggctgttgaatagggtcttggcgttggtagatgtcaagcctgaggatagg
attgcgtcggcgaaggaaccagaagtgaaagaggaagtgaaggaagaaaagaacgagaag
gatggagaggctaaacaagaagatggtgagggagagaaaataggacaaggggagggcgag
ggcgatggcgatggcgaaggagaagctgagggagaagttgaaggtgaaggcgaggatgat
caggaagaagtaccgttcagggaagagattgggacaagggaagtgttgggattcatcgtc
atcactgccatagatacattcgctcgcaagtataccgtgttatcacccacaccaggccgt
ctgccaactacggtcgccatcgctggtgctatcgaatgggttgactctgcataa
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