Campylobacter devanensis: CIGN_1190
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Entry
CIGN_1190 CDS
T10324
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cdev Campylobacter devanensis
Pathway
cdev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIGN_1190 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdev03021
]
CIGN_1190 (rpoB)
03400 DNA repair and recombination proteins [BR:
cdev03400
]
CIGN_1190 (rpoB)
Enzymes [BR:
cdev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIGN_1190 (rpoB)
Transcription machinery [BR:
cdev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIGN_1190 (rpoB)
DNA repair and recombination proteins [BR:
cdev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIGN_1190 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ARQ99457
UniProt:
A0A1X9ST64
LinkDB
All DBs
Position
complement(1191962..1196101)
Genome browser
AA seq
1379 aa
AA seq
DB search
MLNSLYSGNRLRVDFSNVAKEIDVPNLLQLQKKSFDHFLNLDNSQTESGIEKVFKSIFPI
HDPQNRLSLEYVSSEIGKPRYTIRECMERGLTYSVNLKIKIRLIVHDRDEKTGEKIGVKD
IKEQEIFVREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVNKLIYTAQII
PDRGSWLYFEYDTKDVLYVRINKRRKVPITILFRALGYKKQDIVKLFYPMQTLKIQNNKF
LVEFNPDDFTGRVDYDIKDEDGNILHQAGKRLTRKKADKLIEDGVKFIEYPLETLVNRYL
ASPVIDKDSGEVLYDTLTQLDENKIAKIANEQDSIEIANDLANGVDDAIINSFLQDYETL
KLLKQTEGVEDENDLAAIRIYKVMRPGEPVVKEAARSFVNDLFFNPERYDLTKVGRMKMN
HKLGLNAPDYVTVLTNEDIIKTAKYLIKVKNGQGHIDDRDHLGNRRIRSIGELLANELHL
GFVKMQKAIRDKFTSLSNNIDEIMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDL
GFVESPYRKVENGRVTNEIVYLTATQEEGHIIAPASTILDENGMISEDLIEVRQDGEMIL
AKRDDVTLIDLCSGMVMGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKSTAPIVGTGM
EAIVARDAWEAIKARRGGVIEKVDNKNIFILGEDENGPYIDQYTMEKNMRTNQNTTFSQH
PIVKKGQKVEAGQIIADGSSMDQGELAIGKNALIAFMPWNGYNYEDAIVMSERMIRTDAF
TSVHIYEKEIEARELKDGVEEITRDIPNMKEEEIEHLDESGIVRIGTHIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYAPASMEGVVIDVKIFTKKGYEKDSRSFKA
YEDEKNILEKEHHDRLLMLDREEMLRVTALLANNELQSDLEVGKTTYVKGQKIQKEYLAN
INRFTLNSYVKSFSKDVQKSYEDMKAYFQNEKKKLKDEHDAKLEILEKDDILPSGVVKLV
KVYVATKRKLKVGDKMAGRHGNKGIVSNIVPDVDMPYLPDGRSVDIVLNPLGVPSRMNIG
QILESHLGLVGMKLGEQIQEIFDRKSKEWIIELRAKMIEIADVSRLMDAKAILEKIDDEK
LIEYARDWASGVRFATPIFEGVKAEEFSKLFEMAKIDMDGKTELYDGRTGSKMAERVNVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALSGGQRFGEMEVWALEAYGAAHTLR
EMLTVKSDDVEGRWLAYKALTRGENVPSTGIPETFFVLTNELKSLALDVEIYDEDNDNE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatagcctttattctggaaatcgtcttagggtagatttttctaatgttgctaaa
gagattgatgttccaaatttattacaattacaaaaaaagagttttgatcattttttaaat
cttgataattcacaaaccgaaagcggaatcgaaaaagtatttaaatctatttttcctatt
cacgatccgcaaaatagactttcgcttgaatatgtcagtagtgaaattggtaagcctaga
tatactattagagagtgtatggaaagaggcttgacatattctgtaaatttaaaaattaaa
attagattaatagttcatgatagagatgaaaaaacaggtgaaaaaattggagtaaaggat
atcaaagaacaagagatatttgttcgtgaaattcctttaatgaccgatagaatttcattt
attattaacggtgttgagagagttgttgttaatcagctgcatagaagtcctggtgttatt
tttaaagaagaagagagtcctacggttgtaaataaacttatttatactgctcagattatc
ccagatcgtggatcttggttatactttgagtatgatactaaagatgtattatatgtccgt
attaataagcgtcgtaaggtgccaattaccattttatttagggctttaggatataaaaaa
caagatatcgtgaagttattttaccctatgcaaactctaaaaattcaaaataataaattc
ttagtagagtttaatccagatgactttactggtagggttgattatgatattaaagatgaa
gatggcaatatcttacatcaagctggtaagagattaactagaaaaaaagctgataaatta
atagaagatggcgttaaatttatagaatatccgcttgaaacattggtaaatagatatctt
gctagtcctgttatcgataaagatagtggtgaggttttatatgatactcttacacaactc
gatgagaataagatagctaaaatcgctaatgagcaagatagtatagagatagcaaatgat
ttagcaaatggagtcgacgatgctattattaactcatttttgcaagattatgagactctc
aaacttcttaaacaaacagaaggcgtagaagatgaaaatgatctagctgcaattagaatt
tataaagttatgcgtccaggtgagcctgtagttaaagaagctgctcgaagttttgtaaat
gatctattctttaatccagaaagatatgatctaaccaaggttggtcgtatgaagatgaat
cacaagcttggattaaatgcgcctgattatgtaacagtattaactaatgaagatatcatt
aaaactgctaaatatctaattaaggtaaaaaatggtcaaggtcatatagacgatagagac
catttaggtaatcgccgtattcgttctattggtgagcttttagctaatgagcttcattta
ggatttgtaaaaatgcaaaaggctattagggataaatttacaagcctaagcaataatatc
gatgagattatgccatatgatcttgtaaatcctaagatgattaccactactattatggaa
ttctttaccggtggtcaactaagtcagtttatggatcaaactaatccacttagtgaagtt
actcataagcgtagattatcagcacttggtgaaggtggtttagttaaagaaagagctggt
tttgaggttcgtgacgttcaccctactcattatggtagaatttgtccagttgagacccca
gaaggtcaaaatatcggtcttataaatactctttctacatatgctaaagtaaatgattta
ggctttgttgaatctccatatcgtaaagtagaaaatggtagagtaacaaatgaaattgtc
tatcttacagcaactcaagaagagggtcatattatcgctccagcatctacaatcttagat
gagaatggtatgattagcgaggatttaatagaggttagacaagatggtgagatgatactt
gccaaaagagatgatgtaacactaattgacctttgtagcggtatggttatgggggtagct
gcttcattgattccatttttagagcatgatgatgctaaccgtgcgcttatgggttcaaat
atgcaacgccaagctgtgcctcttttaaaatcaactgcacctattgtaggtacaggtatg
gaagctattgtagcacgtgatgcttgggaagctattaaagcaagacgtggcggtgtaata
gaaaaagttgataataaaaatatatttattctaggcgaagatgaaaatggtccatatata
gatcaatacaccatggaaaaaaatatgcgtaccaaccaaaatacgacatttagccaacac
ccaatcgtaaaaaaaggacaaaaagtagaagctggtcagataattgccgatggttctagt
atggatcaaggtgagctagcaattggtaaaaatgccttaattgcctttatgccgtggaat
ggatataactatgaagatgctattgtaatgagcgagagaatgattcgcacagatgcattt
actagcgttcatatctatgaaaaagagattgaagctagagagctaaaagatggcgtagaa
gagattactagagatattcctaatatgaaagaagaagagatcgagcatctagatgaaagt
ggtatcgtaagaatcggtactcatattaagcctggtatgattttagtaggtaaagtatct
ccaaaaggtgaagttaagccaactccagaagaaagacttctaagagcaatctttggcgaa
aaggctggccatgtagtaaataaatccctatacgctccagcaagcatggaaggtgtggta
atcgatgttaaaatctttactaaaaaaggctatgaaaaagactcaagatcatttaaagcc
tatgaagatgagaaaaatatcttagaaaaagagcatcacgatagacttttaatgcttgac
cgagaagagatgttaagagtaactgctttactagctaataacgaacttcaaagcgattta
gaagttggtaaaactacatatgtaaaaggtcaaaagatacaaaaagagtatcttgccaat
ataaatagatttactctaaattcatatgtaaaaagctttagtaaagatgtacaaaaaagc
tatgaagatatgaaagcttacttccaaaatgagaagaaaaaattaaaagatgagcatgat
gctaagcttgaaattttagaaaaagatgatattttgccaagcggagtagtcaaacttgtc
aaagtatatgtagctactaagcgtaagctaaaagttggagataaaatggctggtcgccat
ggtaacaaaggtatagtgtctaatatcgtccctgatgtagatatgccttatttgccagat
ggtaggtcagtagatattgttttaaatccactaggcgttcctagtcgtatgaatattggt
caaattttagaaagccacttaggtcttgtaggtatgaagcttggtgagcaaattcaagag
atttttgatagaaaatcaaaagaatggataatagaattaagagctaaaatgattgaaata
gctgatgtatcaagactaatggatgccaaagcaatattagaaaaaatcgatgatgagaag
ctaatagaatatgcaagagattgggcaagcggtgtaagatttgctactcctatatttgaa
ggggttaaggctgaagaatttagcaaattgtttgagatggcaaagatcgatatggatggt
aaaactgaattatacgatggtagaaccggatctaagatggctgagcgtgtaaatgtcggt
tgtatgtatatgctaaaacttcaccacctagtagatgaaaaagtccatgctagaagtact
ggtccatatagcttagttacgcagcaacctgtcggcggtaaggctttaagcggcggtcaa
agatttggagagatggaggtttgggctttagaagcttatggtgcggctcatacacttcgc
gagatgctaactgtaaaatctgatgatgttgaaggaagatggttagcttataaagcatta
actagaggtgaaaatgtcccaagtacaggtattccagagacattttttgttttaacaaac
gagctaaaatctctagcactagatgttgagatttacgatgaggataatgataatgagtga
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integrated database retrieval system
