Clostridioides difficile 630: CD630_01320
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Entry
CD630_01320 CDS
T00487
Name
(GenBank) putative DNA helicase, RecD/TraA type
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cdf
Clostridioides difficile 630
Pathway
cdf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CD630_01320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdf03400
]
CD630_01320
Enzymes [BR:
cdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CD630_01320
DNA repair and recombination proteins [BR:
cdf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CD630_01320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
HHH_5
AAA_11
HHH
PIF1
HHH_2
AAA_22
NPHP3_N
NAT10_TcmA_helicase
nSTAND3
T2SSE
SLFN-g3_helicase
MeaB
DNA_pol_lambd_f
NTPase_1
AAA
UvrD-helicase
TraI_hel_assoc_N
SRP54
AAA_28
AAA_29
Thymidylate_kin
TrwB_AAD_bind
HerA_C
DEAD
Cytokin_check_N
Mnd1
Ribosomal_S13
5_3_exonuc
AAA_14
ABC_tran
AAA_16
RsgA_GTPase
ATP_bind_1
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
CAJ66952
UniProt:
Q18CM1
LinkDB
All DBs
Position
177257..179476
Genome browser
AA seq
739 aa
AA seq
DB search
MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIGESIEVEGKWVNHKIYG
TQFEVNSFMPVTPSSLEGIYVYLSSGMIHGIGEKMAKRIIDKFGVDTLEVIQNSPEKLQE
VEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCLKIYKKYKSSAIEVINKNPYQ
LAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTLNKSLSNGHTYLPEHVLIQDSEK
LLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLMPYYLAENGVCSQIVKLSQYEFEDL
KIDIDNEINVLEEDKKIKLAEKQILAVKESVNSGVLIITGGPGTGKTTTINAIIDIFENN
GKSVTLAAPTGRAAKRMSETSNKEAKTIHRLLEMGFSTDDDLTFFKDEEDPINSDVIIVD
EVSMVDIILMYNLLRAIKLGTRVILVGDSDQLPSVGAGNVLKDMINSNIINVVKLNEIFR
QAQESMIIVNAHKINNGEPLYLNTKGKDFFFIRKSTNEEILNEIIGLVNERLPKFYKVDK
LKDIQVLSSMRKGELGVTNLNIELQKYLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTK
KWETEDQKESGEGIYNGDIGYVYHIDKDKKTIYILFDQTKIVSYLYDELDEIDHSFCTTI
HKSQGSEFPVVVLPIAWAPPMLLSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQR
YSNLGYKLNKFKQEGLLIE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagaaggaatgataagtgaaatagtctttaaaaacgaagataatggttat
acaatagctcacctggtaaatgaaaatgatgaaattgtggttgtaggatgtatgcctact
ttggcaattggagaaagcatagaagttgaaggaaagtgggtaaatcataagatttatggg
actcaatttgaagtgaatagttttatgccagtaacaccatcatccttagaaggaatttat
gtttacttatcttctggaatgatacatggtattggtgaaaaaatggcaaaaagaataatt
gataagtttggtgtagatacgttagaggtgatacaaaattcaccagaaaaactacaagaa
gtagaaggtatagggagtaaaaaagtaaaacaaatagtaaaaagttatgaagaagacaga
gaattgagaaatataataatacagctatctccttttggaataacaccaaattactgccta
aaaatatataaaaaatataaaagcagtgcaatagaagttataaataaaaacccataccaa
cttgctgaagatataagaggaattggatttaaagtagctgatagtatagcaagtaaaatt
ggtatagataaaaactctaaagatagaatttgtcagggaatcttatacactttaaataaa
tctttaagtaatgggcatacatatttaccagagcatgttctaatacaagattcggaaaaa
ttattggagctaaatggagaaataataaaagagtgtgtaatgatgctagtttataatcaa
aaaatacatatagagaaagtaaacaatgaaaatcttatataccttatgccatactattta
gctgaaaatggagtatgtagtcaaatagtaaaattatcacagtatgaatttgaagactta
aaaatagatatagataacgagattaatgttttagaagaagataagaaaattaagttagca
gaaaaacaaattttagcagtcaaagaatctgttaatagtggagtattaattataactggt
ggaccaggaactggtaaaacaactaccattaatgctatcatagatatatttgaaaataat
ggtaaaagtgtgactttggcagctccaacgggaagagcagcaaagagaatgagtgaaact
tctaataaagaagcaaaaactatacataggttgctagaaatgggattttcaacagatgat
gatttaactttttttaaggatgaagaagacccaataaattcagatgtaataattgttgat
gaggtatcaatggtagacattatcttaatgtacaatttacttagagctataaagttagga
acaagagtaattttagttggagatagtgaccaattaccttctgtaggtgctggaaatgta
cttaaggatatgattaattctaatattataaatgtagttaaattaaatgaaatatttaga
caagcgcaagaaagtatgataattgtaaatgcccataagataaacaatggagaaccactt
tatctaaatacaaaaggtaaagatttcttttttataagaaaatcaactaatgaagaaatt
ttaaatgaaataataggattggttaatgaaagattacctaaattttataaagttgataaa
ttaaaagatatacaagttttatcttcaatgagaaaaggtgaattgggagttactaatctc
aatatagagttacagaagtatcttaacaaaaaagaaaaatttaaagttgaagaaagtttt
tctaaaagattatttagagttggcgataaggtaatgcaagtaaaaaataattatacaaaa
aaatgggaaacagaagaccaaaaagaaagtggagaaggtatctataatggagatatagga
tatgtttatcacatagataaagataagaaaactatttatatattatttgaccagactaaa
attgtatcatacctatatgatgaattagatgaaattgaccatagtttttgtacaacaata
cataaaagccagggaagtgaatttccagttgtagtattgccaatagcgtgggctcctcct
atgttacttagccgtaatttattatatacagcagtaacaagagcaaaaaaattagttgta
ttagttggagatgtgaaatatcttgaatatatgataaaaaataatagagttaatcaaagg
tattcaaatttaggatataagctaaataaatttaaacaagaagggttgttgatagaataa
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