Clostridioides difficile 630: CD630_21830
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Entry
CD630_21830 CDS
T00487
Symbol
csdA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdf
Clostridioides difficile 630
Pathway
cdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CD630_21830 (csdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdf03019
]
CD630_21830 (csdA)
03009 Ribosome biogenesis [BR:
cdf03009
]
CD630_21830 (csdA)
Enzymes [BR:
cdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CD630_21830 (csdA)
Messenger RNA biogenesis [BR:
cdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CD630_21830 (csdA)
Ribosome biogenesis [BR:
cdf03009
]
Prokaryotic type
rRNA helicases
CD630_21830 (csdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
AAA_19
Colicin_D
DNTTIP1_dimer
Pim
Motif
Other DBs
NCBI-ProteinID:
CAJ69067
UniProt:
Q185X0
LinkDB
All DBs
Position
complement(2526501..2527994)
Genome browser
AA seq
497 aa
AA seq
DB search
MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP
LCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQ
RVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVS
LFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELI
YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILV
SSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI
ETYIGYKINELTDIEQSRITHGKVLFEEYSKGILKKVSKRKKVDKNSYKSKDIKLNIESE
VVKLYLNAGKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKY
KEIPIKKKMVKVKRDIR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatacatttgaaaaatttaagttaaatgaaaagatacttaagtcattgaagagt
ttaggatataatataccttctagagtacaaagagaagttattccaaaattattaaaaggt
caaaacttagtagttaggtcaaaaacaggaagtggaaagacagcaagttttgcaatacct
ttatgcgagaatataaatgtagattacaataatattcaagctcttatagtggttccaaca
agagaattagccttgcaagtaaaagatgagatatcagatatagggagactaaagaaggtg
agatgtagtgctatatttggcaaacaatctataaaagaccaaatagctgaattgaaacaa
agggttcatattgttgtagctactccaggcagaatacttgaccatataaatagaggttct
attaagttggaaaatgtaaagtatttagtaatagatgaggcagataaaatgtttaataaa
ggttttgttgaacaaatggaaaaaatattattaaatttacctaaggagaaaatagtaagt
cttttttcagctacaatagatgaagagataaaatatatatgtgaaaaatatatgctagat
tacagtgttataaatatagaagaaaatgagagcgatactaatcaaaaaacaagacaaata
gatgacaaaataatcaaggcaaatggaagagagaagtacatccttttaaaagaattaata
tacagcgaaaatccaaagagtgtgataatattttgtaataccaaagagaaagtatctaaa
ttatataacaagatgagtaaagagggttttttaataagagagttacatgcagatttatca
caagaaagaagaatttttgtaattaaggattttaaaaaccaaaaatttaatatattagtt
agtagtgatgtagcgtccagaggaatacatattgatgatatttctttagtaataaattat
gatgtgccacaagataaagaaaactatatacatagaataggtagaactgggagaaaagga
aatagtggaaaggcaattactatagtaactgaaaaggatgaaaaatatatagagaatata
gaaacgtatataggatataaaataaatgaattaacagatatagaacaaagtagaattaca
catggcaaagttttgtttgaagaatattcaaaaggaatcctaaaaaaagtatcaaagaga
aaaaaagttgataaaaattcttacaaaagtaaagatataaaactaaatatagaaagtgaa
gttgttaaattatatttaaatgctggtaagaagaagaaaataagagttttagatatagtt
ggtgcatttagtaatataaaaggtataactaatgatgatataggtgtaattgaagttcaa
gatttatgttcatatgtagatatattaaattataagggagatttgatattaaaaaaatat
aaggagatacctataaagaaaaaaatggttaaagtgaaaagagatatacgataa
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