Corynebacterium diphtheriae INCA 402: CDB402_0894
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Entry
CDB402_0894 CDS
T01688
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cdh
Corynebacterium diphtheriae INCA 402
Pathway
cdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDB402_0894 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdh03019
]
CDB402_0894 (deaD)
03009 Ribosome biogenesis [BR:
cdh03009
]
CDB402_0894 (deaD)
Enzymes [BR:
cdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDB402_0894 (deaD)
Messenger RNA biogenesis [BR:
cdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDB402_0894 (deaD)
Ribosome biogenesis [BR:
cdh03009
]
Prokaryotic type
rRNA helicases
CDB402_0894 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
AEX46201
LinkDB
All DBs
Position
937586..939616
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AA seq
676 aa
AA seq
DB search
MSITDNATSGENELDIKILSESQDNSQVDEGTTINNDVVADVDDSRVANTSEATDSAQKE
ADSAEKDGFEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAA
FALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQL
SGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPE
DKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRI
LEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDIL
VATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRS
IERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLIKSYAEEHDVPLE
DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRDRDRGSR
FERNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDP
SVIDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGGYRGGRDRNDRGDRGGYRGGRGGYR
GGRDRNDRGGRGGYRD
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccagcggcgagaacgagctggacattaagattttgtcg
gaatctcaggataattcgcaggtagacgaaggcaccaccatcaataatgatgtcgttgcc
gatgtagacgactccagggttgcgaacacttctgaggccaccgactccgctcagaaagaa
gcggacagtgcagaaaaagatggattcgaggctctaggtctcccagacgcaatcctgaag
gcagtcgctaaggttggcttcgaaacgccatccccaattcaggcgcagaccattccggtg
ttgatgcaggggcatgacgttatgggcctcgcgcagacaggtacaggtaagacggcggca
ttcgcgttgccaatcttgtcgcgtatcgacgtcaagaagcgccacccacaggcgttgatc
ctcgccccaactcgcgaacttgctttgcaggttgcagactccttccagtccttcgcagat
catttgggcgacatccacgtgctgccaatctatggcggtcaggcttacggcattcagctg
tccggcctgcgccgtggcgcacagatcatcgtgggtactccaggtcgtgtgatcgaccac
ttggagaagggctccctcgacatttccaacctccgcttcctcgttctggacgaggcagac
gagatgctcaacatgggcttccaagaagacgttgagcgcattttggaggacaccccagag
gacaagcaggttgctttgttctctgccaccatgccaaacggcattcgtcgtttgtctcgc
gactacatgaaggatcctcatgagatccaggtgaagtcgcagacgcgcaccaacacgaac
atcactcagcgttacctcaacgttgcacaccgcaacaagctcgatgccttgacccgtatc
ctcgaggtcaccgagttcgaagccatgatcatgttcgtgcgtaccaagcatgaaactgaa
gaagtcgctgaaaagcttcgcgcacgcggattctccgctgccgctatcaacggcgacatc
gctcaggctcagcgtgagcgcaccgtcgaccagctcaaggacggtcgactcgacatcctc
gttgctaccgacgttgctgcccgtggcctcgacgttgaacgcatcactcacgtgttcaac
tacgacattccaaacgacacggaatcctacgtccaccgcattggtcgtaccggtcgtgca
ggtcgttctggtgaagcaatcttgttcgtcactccgcgtgagcgtcgcatgttgcgttcc
atcgagcgcgccaccaacgcaaagctgatcgaaatggatctgccaaccgttgatgaggtc
aatgagtcccgcaaggcaaagtttgctgactccatcaccgagtctcttgaagacgatcag
gtagcaatcttccgcagcctgattaagtcctacgcggaagagcacgatgttccactagaa
gacatcgccgccgcattggctacccaggcacgcgctggttccgaattcttgatgaaggag
ccaccgccagagaagcgccgcgagcgtcgtgaccgcgacgatcgtcgtggcggacgcgac
cgcttcgaccgcgatgaccgccgtggcggccgtgaccgtgaccgtgaccgtggctcccgc
ttcgagcgtaacgacgacatgcagctctaccgcctagcagttggaaagcgccagcatgtt
cgacctggtgccatcgttggtgctctggcaaacgaaggtggcctgtccaacaaggacttc
ggtcgcatcaacatcttcgttgaccacaccttggtcgagttaccaaagaacatggatcca
agcgtgatcgatcgcctcagcgatacccgtatctccggccaattgatccacatcgaaaag
gacaatggccgaccaccacgtcgtaacgacgacggtgaccgcggcggataccgtggcgga
cgtgaccgcaacgaccgtggtgatcgcggtggctaccgtggtggccgcggcggataccgt
ggcggacgtgaccgcaacgaccgtggtggccgcggcggataccgcgactaa
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