Corynebacterium diphtheriae INCA 402: CDB402_0915
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Entry
CDB402_0915 CDS
T01688
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cdh
Corynebacterium diphtheriae INCA 402
Pathway
cdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDB402_0915 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdh03021
]
CDB402_0915 (rho)
03019 Messenger RNA biogenesis [BR:
cdh03019
]
CDB402_0915 (rho)
Transcription machinery [BR:
cdh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDB402_0915 (rho)
Messenger RNA biogenesis [BR:
cdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDB402_0915 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEX46222
LinkDB
All DBs
Position
965488..967560
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AA seq
690 aa
AA seq
DB search
MTNTDNSAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAINGTSAAHPTSVAPSEE
NKADAPKKERPARRRATKHVAQDAGSEPAPVVTEVAAPAEQNPAPKQEKEAPAGESERQP
RRRRAVKTSVKTTQEEPTEVRVAEAAEATDKSSEEQSAEAGSEDKDNYHYESRSAARRAR
RNRARREQREYNRLGIKDESEASQPENENSRNDVAPESSEVAGNSNEQARSDQADQPTKS
DSNDNGREDNRRGNRHERGERGDRNDRGDRNRRNRRNRRGRDRDDNRDNRENNNNEPRED
EVLQNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVRMNGEN
NHGGHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETEPKVLTT
RVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDM
QRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSP
ASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTG
NAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQAIDLL
IKQLKKTKSNGEFLMQVASSAPMAADAEED
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatacagataacagcgcacagcgtaatctcgctgctctgcgtttgcccgaactg
cgcaaaattgccgcagaaatgggcctgaaaggtacgtccgccctgcgtaagggtgatcta
attgcggctattaacggtacctctgccgctcatccaacatctgtggccccctcggaagag
aacaaagcagatgcaccaaagaaggaacgtccagcacgtcgtcgtgcgactaagcacgtt
gcccaagatgccggttccgagccagcgccagtggtaacagaagttgctgcgcctgcagaa
cagaatcctgcgccaaaacaagaaaaagaagctccagctggtgagtccgagcgtcagcca
cgccgtcgtcgtgcagtaaagacgtctgtgaaaacaacgcaggaggaacccactgaggtt
cgcgtagcagaagctgcagaagctactgacaaatcttctgaagagcagtccgctgaggca
ggttctgaggataaagataactaccactacgagtctcgttctgccgctcgacgtgcccgt
cgtaaccgtgctcgtcgtgagcagcgcgaatacaatcgccttggcattaaagatgagagc
gaagcatctcagccagaaaatgagaactctcgcaacgacgtcgcaccagaatcctctgag
gtagcaggcaacagcaacgagcaagctcgttctgatcaagctgatcaacccaccaagtcg
gactctaacgacaatggtcgtgaggataaccgccgtggcaaccgacacgagcgtggggag
cgtggcgatcgtaacgatcgtggggaccgcaaccgtcgtaatcgtcgtaaccgtcgtggc
cgtgaccgtgatgataaccgtgataatcgcgaaaataacaacaacgaaccacgtgaagat
gaagtcttgcaaaatgttgcaggcatcttggacatcgtggacaacaatgttgctttcgtg
cgtacctccggttaccacgccggtgccgctgacgtctatgtgaacaaccagatgattcgc
cgcttgggattgcgttctggcgacgcaattgtgggtcaagttcgtatgaatggcgaaaac
aaccacggcggacacaaccgtggccgtaaccgccagaagtacaacccattggtacgcgtt
gattcagtcaacggaatgacggtggaagaagcaaaggcacgccctgagtttgccaagctc
accccgttgtaccccaaccagcgtctgcgcctcgaaacggagcctaaggttttgactacc
cgtgtgatcgatttgatcatgccgattggtaaaggtcagcgtgctttgatcgtgtctcct
cctaaggctggtaagaccacgatcctgcaaaatatcgcaaacgctattgctaccaacaac
ccagagtgctacctcatggttgttttggtggatgagcgtccggaagaagttaccgatatg
cagcgttctgtgaagggcgaagttattgcatcgaccttcgaccgtccacctagtgagcac
accgctgttgcagagctcgctattgagcgtgcgaagcgccttgtggagcagggacaggat
gttgtagtactcctagactccattacgcgtcttggccgtgcctacaacaacagctcacct
gcatccggccgaattctctccggtggtgtggactccaacgcgttgtacccaccaaagcgt
ttccttggtgcggctcgcaacatcgaaaatggtggatcgcttacgattatcgccacggcc
atggttgagactggttctgccggcgacaccgtgatcttcgaggaattcaagggcaccggt
aacgccgagctgaagctggatcgtaagatttctgagcgccgtgtattcccagctgtcgac
gtcaacccatcgggtacccgtaaggatgagttgctgctggctccggaagaagctcgcatt
atgcacaaactccgccgcatgctttctgctttggataatcagcaggctatcgatttgttg
atcaagcagctcaagaagaccaagtctaatggtgaattcttgatgcaggtagcaagttct
gcgccgatggctgcggatgctgaggaggactaa
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