Corynebacterium diphtheriae INCA 402: CDB402_1670
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Entry
CDB402_1670 CDS
T01688
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdh
Corynebacterium diphtheriae INCA 402
Pathway
cdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDB402_1670 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdh03019
]
CDB402_1670 (rne)
03009 Ribosome biogenesis [BR:
cdh03009
]
CDB402_1670 (rne)
Enzymes [BR:
cdh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDB402_1670 (rne)
Messenger RNA biogenesis [BR:
cdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDB402_1670 (rne)
Ribosome biogenesis [BR:
cdh03009
]
Prokaryotic type
rRNA processing factors
CDB402_1670 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Fy-3
Motif
Other DBs
NCBI-ProteinID:
AEX46967
LinkDB
All DBs
Position
complement(1817066..1819954)
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AA seq
962 aa
AA seq
DB search
MAEKSKKTTKNQAVSSPIGQAVAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRYRVEKNVENEIAQIEAKVNRDLEEAAANG
HGVVDSEEEKLRYRVEKNVDNEVEQIKQQVERELSQRSAEVEDLHEVIELEKEAEPLEDV
EPESALAPASVSYSVPLFIAPTVVDDELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSTETVEAEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEAEFLARRES
VTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRVQNVLPSME
AAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPIGHKGARLT
TQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTAAENVSAEA
IGADVKRLHKLWDKIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDFTSLVIDGD
RAWNTVHAYVQSVAPDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKVWLPSGGTL
VIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDM
VLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFATECPHCEGR
GVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAVAMHEEKKKVSIEDLVAA
VVIEDDPQPEPEVAPAPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEKPQTYAEAV
EEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPQPEPEVVVEKVSSRGRRRAVRRTVVET
TPEVVAPTETVESSRGRRRAVRKKMAPQPVQTEAVVEDKHEVSAPSQGGRGRRRASRRAP
RR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcggtagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcatattctggcc
aagcagctaggtgttgcatctaaagagcttatcgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaggctaatcagctgctcgactcttttgtt
ccagcgcaaccggaagtagatgagaagttgcgctaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacttggaagaagcggcggcgaacggg
catggtgtagtggattctgaggaagagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcagcaggttgagcgtgaactaagtcagcgttcggcggag
gtagaggacctccacgaggttatcgagctcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacttgcgccagcgagcgtgtcctatagcgttccgctgtttatcgcg
cccacggtcgttgatgatgagcttgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggccgtcgtggggctggtcgt
ggcaagggtgcagatgactcaactgagactgtggaagccgaagaaatcaccgaaccagta
ggtattaaaggctcaactcgtttggaagcacagcggcgtcgccgcgcggagctgcgggaa
gagtcgaaaaagaagcgccacatcgtttctgaggccgagttcctagcacgtcgcgaatct
gttacgcgcacgatggtggtacgtgagcgcgatcgtgtagaccaccatggcatggtgact
caggtgggcgtgctcgaagacggcatgcttgttgagcactttgttaccagtgaggcccag
gcctcgatgatcggcaacatctatcttggtcgcgtgcaaaacgtcctgcccagcatggaa
gctgccttcatcgacatcggaaagggccgcaacggtgtgctttacgcgggcgaggtggac
tggcgtgccgcaggccttggtgggcgaggccgtcgtatcgagcaagccctgaaatccggt
gaccaggtcctcgtccaggttgctaaagatcctattgggcacaagggtgctcgccttacc
acccagatttctttcgcgggacgctacttggtctacgtgccaggtggacgcactgcaggg
atttcccgcaagctcccagctcctgagcgtaagcgtttgaaggaaatcctcaaggaggtc
gtgcctcacgacggcggtgccatcattcgaactgccgccgagaacgtttctgcagaggcg
atcggtgcagacgtcaaacgcttgcacaagctctgggataagatccagcagcgcaccgaa
gaagaaaaagcttccaagggtgccaagccggtgaccatgtacgaagagcccaacatgctc
gtcaaagtggtgcgtgatctcttcaatgaggattttacctccttggttatcgatggtgac
cgcgcatggaacacggttcacgcgtatgtgcagtcggttgccccagacttgttgggtcgc
ttggtgcgttttgatcgcagcgaacatgagggacgtgacgcatttgaggtgcaccgcgtc
aacgagcagattaaaaaggcactgtcgcgaaaggtttggctgccatccggtggcaccttg
gtgatcgaccgcaccgaagccatgacggtgatcgacgtgaacacaggcaagttcactggt
gccggcggaaacctcgaagagaccgtgaccaagaacaaccttgaggctgcagaagagatc
gttcgtcagatgcgtctgcgcgacctcggcggcatgatcgtggttgatttcattgacatg
gttttgccggaaaatcaggacttggtgctgcgtcgcctcaccgaagcgctaggacgcgac
cggacgcgccaccaagtatccgaggtgacgtcgttaggcctcgtccagatgacccgcaaa
cgcttgggcactgggttgcttgaaacgtttgctaccgaatgcccacactgtgaaggccgc
ggcgtgatcatccacgacgatcccgtcgagcagcgagatgccgatgtggcaatggaaaag
tctcatcgtgctcgcaatgagcgcaagaagaacaagaaccacaccccatccgagcatccg
gcggccgttgccatgcacgaggagaaaaagaaggtcagtatcgaagacctcgtcgccgca
gtggtaattgaggacgatccacagccagagcctgaagtggcaccagctcctgccgacgac
gacgtgatggacatcgttagtgctgcgttggatcgtgcttatgaggaagatcctgacgag
ccctccggatctgactatctgccgctagaagaaaagccgcagacctatgccgaggcagtg
gaagaatttgagcgttctccacgccgtaagcgtaagacccgtggcaattccgtctccgat
gtgccgccgcgcaaggcagattttgaaaagccagaaccgcaaccggaacctgaggttgtc
gtggagaaagtaagctcacgtggtcgtcgtcgcgctgtacgacgcacggtagtggagact
acccccgaggtggtagcgccaacggaaactgttgaatcctcccgcggtcgccgtcgcgct
gttcgtaagaaaatggctcctcagccagtgcaaacggaggctgtagtggaagacaaacat
gaggtttctgcaccatctcagggtggtcggggacgccgtcgtgcttcacgacgtgcaccg
cgccgttaa
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