Corynebacterium diphtheriae NCTC 13129: DIP0447
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Entry
DIP0447 CDS
T00151
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cdi
Corynebacterium diphtheriae NCTC 13129
Pathway
cdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DIP0447 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdi03021
]
DIP0447 (rpoC)
03400 DNA repair and recombination proteins [BR:
cdi03400
]
DIP0447 (rpoC)
Enzymes [BR:
cdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DIP0447 (rpoC)
Transcription machinery [BR:
cdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DIP0447 (rpoC)
DNA repair and recombination proteins [BR:
cdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DIP0447 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAE48952
UniProt:
Q6NJF6
LinkDB
All DBs
Position
413298..417308
Genome browser
AA seq
1336 aa
AA seq
DB search
MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDDEARHADQTTLEAEMLLEKKDVEADMESEIAERAAKLEED
LAELEAAGAKADARNKVKKAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDSEAEELREIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKNENEIGGQ
GAYASATEEGPAQGVYSSYAEAIMARDRGVLGLQAKIKVRISHLRPPVDIEAEQFPEGWN
KGDVWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGTGKIMLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEARKIERKYWEQGALTERE
RYDRLVELWKDATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTKQGIRVPVAVEVKDAEGNVTGYTGHSLIETSVAGRVAATAVKDAEGNVMVEPGENL
TDQLIDELIAAGVKEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLDDEGNFYTL
TINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLAEGDHVEVGDRLLRGPADP
HDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG
TLVDLSEAKAANAEALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI
NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
GEFTGASVPLDEAYDL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacttcttcgacgagcttcgaatcggcctggccactgccgacgacatc
cgccgttggtccaagggcgaggttaagaagccggagaccattaactaccgcaccctgaag
ccagaaaaggacggccttttctgcgagcgcatcttcggtccaactcgtgactgggagtgt
gcctgcggtaagtacaagcgtgtccgctacaagggcatcatctgtgagcgctgtggcgtt
gaggtgaccaagtctaaggttcgccgtgaacgcatgggccacattgagttggctgcacca
gtgactcacatctggtacttcaagggtgttccatcccgcttgggctacctgctggacttg
gctccaaaggatcttgagcgcatcatctacttcgcagctaacatcatcaccagtgttgat
gatgaggctcgccacgctgaccagaccactttggaagcagaaatgcttctggagaagaag
gacgtcgaggcggacatggagtccgaaatcgccgagcgtgccgccaagctggaagaagac
cttgcagaactcgaagcagccggcgctaaagccgacgctcgcaacaaagtcaagaaggct
gccgagaaggaaatgcagcacatccgcgagcgcgcggagcgtgagatcgaccgccttgag
gagatctggcagaccttcatcaagcttgctcctaagcagatgatcatcgatgagaccatc
tacgaagagcttgtggaccgctacgaggattacttcaccggcggcatgggtgcagaggct
atccagaccctgatccgcaacttcgaccttgattccgaggctgaggaacttcgcgagatc
atcaacaacggcaagggccagaagaagatgcgtgccctgaagcgtctgaaggttgttgca
gccttccagcgttcaggtaacgatccagctggcatggttttggattgcattcctgtgatc
ccaccagagcttcgccccatggtgcagctcgacggtggccgctttgcaacctccgacctc
aacgacttataccgtcgtgtgatcaaccgcaacaaccgcctcaagcgcatgattgaactc
ggtgcccctgagatcattgtgaacaacgagaagcgcatgttgcaggagtccgtggacgcg
ttgttcgacaacggccgccgcggtcgtccagtcaccggtcctggtaaccgtccgctgaag
tccctgtctgacttgctcaagggcaagcagggccgcttccgtcagaacttgctgggtaag
cgtgtcgactactccggtcgttccgttattatcgttggtcctcagctcaagctccacgag
tgtggtctgcctaagctgatggctctggagctgttcaagccgttcgtgatgaagcgcctc
gtggaaaacgactacgcgcagaacatcaagtcggcaaagcgcatggtggaacgccagcgt
ccagaggtgtgggacgtcctcgaagaggcaatttccgagcacccagtgatgctcaaccgt
gcacctaccctgcaccgcttgggtattcaggcattcgagccaaagcttgtcgagggtaaa
gcaattcagctgcacccattggcatgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccactgtccgctgaggctcaggcagaagctcgcatcctcatgctg
gcctcgaacaacattctttcccctgcatcgggtaagccacttgccatgccacgtctagac
atggtgaccggcctgtactacctgaccatggacaagaacgaaaacgagatcggcggccag
ggcgcatacgcttcagcaaccgaagaaggaccagcacagggcgtgtactcgtcttatgct
gaggccatcatggctcgtgaccgcggcgttcttggcctgcaggctaagattaaggtgcgt
atttctcacctgcgtccaccagtagatatcgaggccgagcagttcccagagggctggaac
aagggcgatgtttggttggcagacaccaccttgggtcgcatcatgttcaacgaactgctg
ccttggaactacccataccttgaaggtgtgatggttcgtaagggtggcggcaccggcaag
atcatgctcggtgacgtgattaacgacctcgcagcaacctacccaatgatcactgttgct
cagacgatggacaagatgaaggatgccggtttctactgggcaacccgttctggcgtgacc
atcaccatgtctgacgtgctcgttcttcctaacaaggaagaaatccttgaccgctacgag
gctgaggcacgcaagattgagcgcaagtactgggagcagggtgctctgaccgagcgcgag
cgttacgaccgcctcgttgagctgtggaaggacgctaccgacgaggttggtaacgccgtc
gagaagctctacccagacgacaacccaattccaatgatcgtgaagtcgggtgctgccggt
aacatgcgtcagatctggacgcttgctggtatgaagggcatggttgtgaactcgaagggt
gactacatcacccgcccgattaagacctccttccgtgaaggcctgtcggttctcgagtac
ttcaacaactcccacggttcccgtaagggtctggccgataccgctctgcgtaccgcagac
tccggttacctcacccgtcgtctcgtcgacgtggcacaggacgttatcgtccgcgaagac
gactgcggcaccaagcagggcattcgtgttcctgtagccgttgaagtcaaggacgctgag
ggcaacgtgaccggttacaccggacacagcctgatcgaaacctccgtggccggtcgtgtg
gcagctaccgcagtcaaggacgccgaaggcaacgtcatggtcgagccaggtgagaacctg
accgatcagcttatcgacgagctcatcgccgctggagtcaaggaagtcaaggtccgctcg
gtcttgacttgccagaccccaaccggtgtgtgcgcaaagtgctacggcaagtccatggca
accggcaagctggtcgacatcggagaagcagtcggtattgtggctgcacagtcgattggt
gagcctggtacccagctgacaatgcgtacgttccaccagggtggtgtcggtggcgacatt
accggtggtctgcctcgtgtccaggagctcttcgaggctcgtgttcctaagaaccgtgca
ccgatcgcttctgtcgcaggtaccgtccaccttgatgacgaaggcaacttctacaccctg
accatcaacccagacgatggatctgacgttgtggtctacgagaagctgtcgaagcgtcag
ggcttggcaactgtccgcgttccaatggaatccaacccaggtgccatgattgagcgcacc
ttggccgagggtgaccatgttgaggttggcgaccgcctgctgcgcggccctgccgatcca
catgatgtactcgaggttctgggtcgccgtggtgttgagcagcaccttgtcgacgaggtg
caggacgtctaccgtgcccagggtgtggctattcacgataagcacatcgaaatcatcatt
cgacagatgctgcgtcgcggaaccgtcatcgagtctggttccaccgagttcctcccaggt
acgctggtggatctgtccgaggctaaagctgcaaacgctgaggcattggcaaacggtggc
cagccagcagagcttcgctccgagatcatgggtatcaccaaggcttccttggcaaccgag
tcgtggctatccgccgcatcgttccaggaaaccactcgtgtgcttaccgacgccgctatc
aacaagcgctccgacaagctgatcggcctgaaggagaacgtgatcatcggtaagctgatc
ccagctggtaccggtatctctcgttaccgcaacatctccgtgaagccaaccgaggctgca
cgaaatgccgcatactcgatcccaacatatggtgattcgatctacggtgatgatggctac
ggtgagttcaccggagcttcggttccactggatgaggcatacgacctctaa
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