Corynebacterium diphtheriae NCTC 13129: DIP1423
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Entry
DIP1423 CDS
T00151
Name
(GenBank) Putative ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cdi
Corynebacterium diphtheriae NCTC 13129
Brite
KEGG Orthology (KO) [BR:
cdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdi03019
]
DIP1423
Enzymes [BR:
cdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DIP1423
Messenger RNA biogenesis [BR:
cdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DIP1423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
AAA_11
ResIII
NACHT
T2SSE
ABC_tran
TsaE
PhoH
AAA_24
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CAE49954
UniProt:
Q6NGT0
LinkDB
All DBs
Position
1441388..1445341
Genome browser
AA seq
1317 aa
AA seq
DB search
MFIMGKRNLKHSNRRVKPTTQDSPEVKELKASCMSQLSGLGLALHRSFERRITKAHSTKA
LEAIAQDLATALKSIEKRRSSIPVISYPDNLPVSSQRDEIAAAIQENQVVIIAGETGSGK
TTQIPKICLDLGHGITGLIGHTQPRRLAARTVAERIADELDQPIGESVGYAIRFDDRVSP
STCIKLMTDGILLAEMQRDRYLNAYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVI
ITSATIDPERFAHHFSDENGTPAPIIEVSGRTYPVEVLYRPLQLEDGTSLIDVDPIDGLI
SAIKELMSYGDGDILCFFAGESDIRDAMEAIKEQRWRNVEVTPLFGRLSNQEQHKVFTSH
TGRRIVLATNIAETSLTVPGIHFVVDLGTARISRYSSRTKVQRLPIEPISQASARQRSGR
CGRVADGIAIRLYSEEDFLSRPEFTDPEILRTNLANVILQMASLRLGHIDDFPFIQAPDT
KSIRDGILLLHELGALTTTDTRTDLPRLTTIGKTLARIPLDPRLGRMLIEAERLGCLAHV
MVLVAALSIQDVRERPLDYQAQADQLHARFKDPQSDFSSYLKLWAYINQRRDELSGNAFK
KVMQQEFLHYMRIREWFDLVRQLKSIGEQVGWKSFERSDATDNDCIHQALLAGLLSHIGI
KEGDFREFVGARNTRFMVFPGSSLAKKPPQFVMAGELVETSRLWARDVAAIDPRWVEPLA
QNLLKHQYSEPHWSLKRGAAMVYQRSTLYGVPIVVDRLINLATIDAVGAREIFIREALIN
GQWTTHHSFFKNNMQKLEAVNTLEEKARRRDIVVTEDTLYEFYNDRLPQSVVSTRAFDHW
WKKTRTQTPDLLDFDPDKLISDSAEEVNAERYPDSWYDNGVELELRYRFEPGHPDDGVTV
NVPVPYLASLEESGFEWLVPGFIQELLTASLKTLPKHLRKKIVPAPNYANLIQPRISFRK
GPLTQAITNALKDAGITGIEAEDFDLSALPDHLRITFAAIDKHGKVIDKDKNLARLKTRQ
KNKIRASALKIGKAVHQSAVTTWTSSTLGKIPEEVSTKVDGQLIKTYPALVIGEQGFSVE
AKPTRAEADASMLTATLAMLMKASNINTQKMLNGLPLQQRVAVENYPHGSSNGLVQDVKA
AVIRDLLIERGGPVRSPEEFDVLKKEITPKVPRLTRQAVVQLAPSINCYLKTRDEVAHWE
GDAIDDISRQLDFLLPPFAVSHHGIRHLARLPRLCEAITIRLDSMSRDSYKDAELQLVIN
RLENALYAKANRGGIPKSKINDIAWKIQELRVSLFAQRLGTAEKVSERKIHKLIEAL
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgttcattatgggcaaacggaatctaaagcactctaaccgacgcgtaaaaccaacgact
caagattcaccagaagttaaagagttaaaagcatcatgcatgtcccaattatcaggtttg
ggacttgccctccaccggtcttttgagcgccgtatcactaaagcgcacagcacgaaggct
ttagaagctattgcacaggacctcgcaacagcgcttaaatcaattgaaaaacgacgcagc
agtatcccagttatctcctatccggacaatctcccagttagttcacaacgggacgagatc
gctgccgcgatccaagaaaaccaagttgtcatcatcgctggcgaaacaggttccggtaaa
actactcagattcctaaaatatgtcttgatttgggacacggaattactggcttaattggg
cacacgcagccacgtcgattagccgcacgaacggttgccgaacgtattgcagacgaatta
gatcagccaatcggtgaatctgttggttacgcgattcgcttcgacgatcgtgtctccccc
agtacgtgtatcaagctcatgacagacggtattttactggcagaaatgcaacgcgatcgt
tacctcaatgcttacgacacaatcatcattgacgaggcacacgaacgaagcctgaatatc
gatttcatccttggatatctcaaacagctactccctaagcgtccagatctaaaagtcatc
atcacatcggcaaccattgatcctgaacgattcgcgcaccatttttcggacgaaaatggt
acaccagcccccattattgaagtgtctgggcgaacctacccagtggaggtactttatcgc
cccctccagcttgaagatggtacgtcgcttatcgacgtcgaccccatcgacggcctaatc
agcgccattaaggagcttatgagctacggtgacggtgacatcctctgtttctttgccggc
gaatcagatattcgtgacgccatggaagctataaaagagcaacgatggcgaaatgttgaa
gtcacaccgctatttggtcgactgtctaaccaagaacaacataaagtgtttacatcacat
actggccgccgaattgttcttgcaacaaatattgctgaaacatcactgactgtccccggt
attcactttgttgtcgatctaggtacagcacgcatatctcggtattccagtcgtacaaaa
gtacaacgattacccatcgaaccgatttcccaagccagcgctcgtcaacgttccggccgc
tgtggacgtgtcgccgatggcattgcgattcggttgtactccgaagaggactttctctca
cgccctgaattcaccgatccagaaattctgagaacgaatttggccaacgtgattctgcag
atggcctcactacgcctaggccatatcgacgatttccccttcatccaagcgcccgatacc
aagtcgatccgtgacggaatactgttgttgcacgaacttggtgcattaaccacaacggat
acgcggactgatcttccacggttaacaacaatcggcaagacacttgccagaattccgctc
gatccacgactaggcagaatgctcatcgaagcagaacgtctaggctgcctcgcccatgtc
atggtgttagtagctgcgctgtcgattcaagacgtgcgcgagcggcctcttgactatcag
gcgcaagcagatcaactccacgctcgattcaaagatcctcaaagcgacttttccagctat
ctcaaattatgggcgtacatcaatcagcgtcgcgatgaattgtcaggaaacgcatttaaa
aaggtgatgcaacaagagttccttcactatatgcggattcgtgaatggtttgatctcgtt
cgccaactaaaatccataggtgaacaagtcggctggaaatcgtttgaacggtcggacgca
accgacaacgattgcattcaccaagctctcttagcggggcttttgtcccatatcggcatc
aaagaaggcgattttcgagaatttgtaggcgcccgcaatacgcgttttatggtcttccct
ggttcaagtcttgcgaagaaacctccacaattcgttatggctggagagcttgtcgaaacg
tcaagactctgggcacgcgacgtcgccgcaatagatccacgttgggtcgagcctctggca
caaaacttgctcaaacaccaatattcggagccacattggtctctcaaacgtggtgcagcg
atggtttaccagcgttcaacgctctatggagtgccgatcgttgtcgatcgactgatcaat
ctagctaccatcgatgccgttggcgcacgcgagatcttcatccgtgaagctttaattaat
gggcaatggactacccatcacagctttttcaaaaacaatatgcagaaactagaagctgta
aatactttggaggaaaaagcaaggcgacgcgatatcgtagtaaccgaagataccctgtac
gagttttacaatgatcggctcccacaatctgtcgtttccacccgagcgtttgatcattgg
tggaagaaaacccgcacacagacacctgatttactcgattttgatcctgacaaacttatt
tctgatagcgctgaagaagttaatgcagaacggtatccagatagttggtacgacaacggt
gtagagctagaactccgttatcgttttgaacctggccatcctgacgacggagttacagtc
aacgttccagttccatatcttgcgtcacttgaggaaagtggtttcgaatggcttgttccc
ggttttatccaagagctgctgactgcttctttaaaaacacttccaaaacatctacgaaaa
aaaattgttccggctccgaactatgcgaatctgattcagccacggatttcgttccgaaaa
ggaccgcttactcaggctataacgaatgcgctcaaagacgccggaattacggggatcgaa
gcagaggactttgatttatcagcgcttccagatcatttacggattacattcgcagcaata
gacaaacatggaaaggtaatcgacaaagataagaaccttgctcgtcttaaaacacgtcaa
aaaaataaaattcgtgcgtctgctctcaaaatcggaaaagcagtccaccaaagcgccgtc
acaacttggacatcctcaactctaggaaagattcctgaagaagtttccacaaaagtagac
ggccaactcataaagacttatcccgccttagtaataggagaacaaggattctcagtcgag
gccaaacctacccgcgccgaagctgacgcgtccatgctgacggcaacgttagcgatgctg
atgaaggcatcaaatattaacacccaaaaaatgcttaatgggttgcctcttcaacaacgt
gttgcagttgagaactatccccacggcagcagcaatggattagtacaagatgtcaaagct
gcggtgatccgtgacctactcatcgaacgcggcggaccagtacgttcaccagaagaattt
gatgttcttaaaaaggaaattacccccaaagtgccgaggctgacgcgtcaagcggtcgtg
caattagccccttctatcaattgttatctcaaaactagagacgaagttgcgcactgggaa
ggtgacgccattgatgatattagtaggcaattagatttcctgctccccccatttgcagta
tcacatcatggaattcgtcatctcgcgcgattaccgcggctttgtgaagctataaccatt
cggctggattcaatgagccgagattcttataaggatgcggagctacaacttgttattaat
agactcgaaaatgccctctatgcgaaggccaatcgtggtggaattccaaaatcaaaaatc
aacgatattgcgtggaaaattcaagagttacgggttagtctttttgcccagagactaggt
actgcagaaaaagtatcggaacgaaagatccataagctcattgaagctctttaa
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