Corynebacterium diphtheriae NCTC 13129: DIP1782
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Entry
DIP1782 CDS
T00151
Name
(GenBank) Putative RNA-associated protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cdi
Corynebacterium diphtheriae NCTC 13129
Pathway
cdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIP1782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cdi03019
]
DIP1782
03009 Ribosome biogenesis [BR:
cdi03009
]
DIP1782
Enzymes [BR:
cdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DIP1782
Messenger RNA biogenesis [BR:
cdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DIP1782
Ribosome biogenesis [BR:
cdi03009
]
Prokaryotic type
rRNA processing factors
DIP1782
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Fy-3
Motif
Other DBs
NCBI-ProteinID:
CAE50312
UniProt:
Q6NFV4
LinkDB
All DBs
Position
complement(1824673..1827561)
Genome browser
AA seq
962 aa
AA seq
DB search
MAEKSKKTTKNQAVSSPIGQAIAALDRSIIGEKIRVHILAKQLGVASKELIAQLATMGLK
KVAQSTLSNQEANQLLDSFVPAQPEVDEKLRHRVEKNVENEIAQIEAKVNRDLEEAAANE
HRVVDSEEEKLRYRVEKNVDNEVEQIKRQVERELSQRSVEVEDLHEVIELEKEAEPLEDV
EPESAPAPASVSYSVPLFIAPTVVDDELEEVEDDEDGEDDTDDDSTHAKRRRRGRRGAGR
GKGADDSTETVEAEEITEPVGIKGSTRLEAQRRRRAELREESKKKRHIVSEAEFLARRES
VTRTMVVRERDRVDHHGMVTQVGVLEDGMLVEHFVTSEAQASMIGNIYLGRVQNVLPSME
AAFIDIGKGRNGVLYAGEVDWRAAGLGGRGRRIEQALKSGDQVLVQVAKDPIGHKGARLT
TQISFAGRYLVYVPGGRTAGISRKLPAPERKRLKEILKEVVPHDGGAIIRTAAENVSAEA
IGADVNRLHKLWDKIQQRTEEEKASKGAKPVTMYEEPNMLVKVVRDLFNEDFTSLVIDGD
RAWNTVHAYVQSVAPDLLGRLVRFDRSEHEGRDAFEVHRVNEQIKKALSRKVWLPSGGTL
VIDRTEAMTVIDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDM
VLPENQDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFATECPHCEGR
GVIIHDDPVEQRDADVAMEKSHRARNERKKNKNHTPSEHPAAAAMHEEKKKVSIEDLVAA
VVIEDDPQPEPDVVPTPADDDVMDIVSAALDRAYEEDPDEPSGSDYLPLEEKPQTYAEAV
EEFERSPRRKRKTRGNSVSDVPPRKADFEKPEPQPEPEVVVEKVSSRGRRRAVRRTVVEA
TPEVVAPTETVESSRGRRRAVRKKMAPQPVQTEAVVEDKHEVSAPSQGGRGRRRASRRAP
RR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaaagtccaagaaaacaaccaaaaaccaagctgtatcttcgccgattggccaa
gcgatagctgcattggatcgctcgattatcggcgaaaaaatccgtgtgcacattctggcc
aagcagctaggtgttgcatctaaagagctcatcgcgcagttggcaaccatgggactgaaa
aaagtagcgcagtcgacgttgagtaaccaagaagctaatcagctgctcgactcttttgtt
ccagcgcaaccggaagtagatgagaagttgcgccaccgcgtggaaaagaacgtggaaaat
gagattgcgcagatcgaagccaaggtcaaccgcgacttggaagaagcggcggcgaacgag
catcgtgtagtggattctgaggaagagaagctgcgctaccgcgtggaaaagaacgtggat
aacgaggtcgagcagattaagcggcaggttgagcgcgaactaagtcagcgttcggtggag
gtagaggacctccacgaggttatcgagctcgaaaaagaagcggagccgctcgaggacgtt
gagccggaatctgcacctgcgccggcgagcgtgtcctatagcgttccgctgtttatcgcg
cccacggtcgttgatgatgagctcgaagaagtagaagacgacgaggatggggaagacgac
actgacgacgactccactcacgctaagcgtcgtcgtcgcggccgtcgtggggctggtcgt
ggcaagggtgcagatgactcaactgagactgtggaagccgaagaaatcaccgaaccagta
ggtattaaaggctcaactcgtttggaagcacagcgtcgtcgccgcgcggagctgcgggaa
gagtcgaaaaagaagcgccacatcgtttctgaggccgagttcctagcacgtcgcgaatct
gtcacgcgcacgatggtggtacgtgagcgcgatcgtgtagaccaccatggcatggtgact
caggtgggcgtgctcgaagacggcatgctcgttgagcactttgttaccagtgaggcccaa
gcctcgatgatcggcaacatctatcttggtcgcgtgcaaaacgtcctgcccagcatggaa
gctgccttcatcgacatcggaaagggccgcaacggtgtgctttacgcgggcgaggtggac
tggcgtgccgcaggccttggtgggcgaggccgtcgtatcgagcaagccctgaaatccggt
gaccaagtcctcgtccaggttgctaaagatcctattgggcataagggtgctcgccttacc
acccagatttctttcgcgggacgctacttggtgtacgttcctggtggacgcactgcaggg
atttcccgcaagctcccagctcctgagcgtaagcgtttgaaggaaatcctcaaggaggtc
gtgcctcacgacggcggtgccatcatccgaactgccgccgaaaacgtttctgcagaggcg
atcggtgcagacgtcaaccgtttgcacaagctctgggataagatccagcagcgcaccgag
gaagaaaaagcttccaagggtgccaagccggtgaccatgtatgaagagcccaacatgctc
gtcaaagtggtgcgtgatctcttcaatgaggatttcacctccttggttatcgatggtgat
cgtgcatggaacacggttcatgcgtatgtgcagtcggttgccccagacttgttgggccgc
ttggtgcgttttgatcgcagcgagcatgagggacgtgacgcatttgaggtgcaccgcgtc
aacgagcagattaaaaaggcactgtcgcgaaaggtatggctgccatccggtggcaccttg
gtgatcgaccgcaccgaagccatgacggtgatcgacgtgaacaccggcaagttcactggt
gccggtggaaaccttgaagaaactgtcaccaagaacaaccttgaggctgcagaagagatc
gttcgccagatgcgtctgcgcgacttgggtggcatgatcgtcgtcgacttcatcgacatg
gtcttgcctgaaaaccaagacttggtcttgcggcgcctcaccgaagcgctaggacgcgac
cggacgcgccaccaagtatccgaggtgacgtcgttaggcctcgtccagatgacccgcaaa
cgcttgggcactgggttgcttgaaacgtttgctaccgaatgcccacactgtgaaggccgc
ggcgtgatcatccacgacgatcccgtcgagcagcgagatgccgatgtggcaatggaaaag
tctcatcgtgctcgcaatgagcgcaagaagaacaagaaccacaccccatccgagcatccg
gctgcagctgctatgcatgaggaaaagaagaaggtcagtatcgaagacctcgtcgccgca
gtggttattgaggacgatccgcagccggaacctgacgtagtgccaacacctgccgatgac
gacgtgatggacatcgttagcgctgcgttggatcgtgcttatgaggaagatcctgacgag
ccctccggatctgactatctgccgctagaagaaaagccgcagacctatgccgaggcagtg
gaagagtttgagcgttctccacgccgtaagcgtaagacccgtggcaattccgtctccgat
gtgccgccgcgcaaggcagattttgaaaagccagaaccgcaaccggaacctgaggttgtc
gtggagaaagtaagctcccgtgggcgtcgtcgagctgtgcgacgcacggtagtggaggct
acccccgaggtggtagcgccaacggaaactgttgaatcctcccgtgggcgtcgtcgcgct
gttcgtaagaaaatggcccctcagccagtgcaaacggaggctgtagtggaagacaaacat
gaggtttctgcaccatctcagggtggtcggggacgccgtcgtgcttcacgacgtgcaccg
cgccgttaa
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