Caldicellulosiruptor diazotrophicus: CaldiYA01_03940
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Entry
CaldiYA01_03940 CDS
T08057
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cdia
Caldicellulosiruptor diazotrophicus
Brite
KEGG Orthology (KO) [BR:
cdia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cdia03016
]
CaldiYA01_03940 (truD)
Enzymes [BR:
cdia01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
CaldiYA01_03940 (truD)
Transfer RNA biogenesis [BR:
cdia03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CaldiYA01_03940 (truD)
Prokaryotic type
CaldiYA01_03940 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
BCS80434
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All DBs
Position
452561..453730
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AA seq
389 aa
AA seq
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MKIKVLPEDFVVKEKLKLEIKPSGRYKIYLLTKRHWNTVDALRIISKENKISLEKIGCAG
RKDRHALTFQYISVPREYTINFNKENVKVEFIGYSDDFVSPLILEGNFFEITIRKLKNKD
EKILRRLNEVQQFGFPNYFDDQRFGSSQSEDEFIGEKIVKKHYNGALKLYFTTIHPEDKK
EEKERKKKISELWGDFEKILPLCKTKVERDIIKTLLKGKSRHYLIRALNLIPKEEMSIFL
SAYQSYIWNRTLIAVLPYYVDLLKPVKGKIMDYLIYTTLSTKSLNSLKNLHIPTVSSKIP
YVSDIVNNAILEILNERGVKPSDFDIERIKSWYFKSFLRPAIVFPEKLEVSSFEEDDFYS
GYYKLRIKFYLPAGSFATMLIKSLTITNI
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaattaaggttttgccagaggattttgtagtaaaagaaaaacttaagctagagata
aaaccgtcggggagatacaagatttatcttttgacaaaaaggcactggaacacggttgat
gctctcaggatcatctcaaaagagaacaagatttcacttgagaagattggctgtgcaggc
agaaaagataggcatgcacttacttttcagtatatttctgtgccaagggaatataccata
aattttaataaagaaaacgtaaaagtagagtttatagggtattcagatgattttgtatca
ccattgattcttgaagggaatttttttgaaataacaataagaaaattaaaaaataaggat
gagaaaattttacgaagattaaatgaagtgcagcagtttggctttcccaactactttgat
gaccagcggtttggaagcagtcaaagtgaagatgagttcataggcgaaaagattgttaaa
aaacattacaacggtgctctcaaactttactttacaaccattcatcctgaagataaaaaa
gaagaaaaggagaggaagaaaaaaatctctgagctttggggagatttcgaaaagatactg
cctctttgtaaaacgaaggtagaaagggatattataaaaactcttttaaaaggtaagagc
agacactatttaattagagcactcaatcttattcccaaagaagagatgtctatttttctt
tctgcttaccagagctatatatggaacaggacattgattgcagttttgccttattatgtt
gatttgttaaaacctgtaaaggggaaaattatggactacttgatttacactacactttca
acaaagtctttaaatagtttaaaaaacctccacattccaaccgtttcatcaaaaatacca
tatgtgagtgatattgtaaataacgctattttagagattttaaacgaaagaggagtaaaa
ccttctgattttgatattgaaaggattaagagctggtattttaaatcatttttacgacct
gccatagtctttccagaaaagcttgaggtttcaagctttgaagaggatgatttttacagc
gggtattataagctaaggataaaattctatcttcctgcgggatcctttgcaaccatgctt
ataaaaagtttaacaattacaaacatataa
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